| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g15942 | 5:14,806,407-14,808,137 | + | C2H5g14904 | CX5g038438 | LOC_Os05g31420 | Os05g0378500 | Gnd5 | Detail |
| C1H5g26766 | 5:14,841,025-14,841,713 | - | C2H5g05514 | CX5g037505 | LOC_Os05g31470 | - | - | Detail |
| C1H5g21416 | 5:14,847,264-14,852,436 | - | C2H5g07919 | CX5g040361 | LOC_Os05g31480 | Os05g0378800 | - | Detail |
| C1H5g03148 | 5:14,853,191-14,857,977 | - | C2H5g27417 | CX5g038969 | LOC_Os05g31490 | Os05g0378900 | - | Detail |
| C1H5g12936 | 5:14,863,567-14,866,978 | - | - | - | LOC_Os05g31520 | - | - | Detail |
| C1H5g20720 | 5:14,867,847-14,869,818 | - | C2H5g25052 | - | - | - | - | Detail |
| C1H5g28359 | 5:14,872,112-14,881,346 | + | C2H5g19061 | CX5g039321 | LOC_Os05g31530 | Os05g0379500 | - | Detail |
| C1H5g13126 | 5:14,882,877-14,883,458 | - | - | - | - | - | - | Detail |
| C1H5g09848 | 5:14,883,520-14,884,320 | - | - | - | - | - | - | Detail |
| C1H5g28629 | 5:14,884,371-14,884,991 | - | - | - | - | - | - | Detail |
| C1H5g31239 | 5:14,885,493-14,887,155 | - | - | - | - | Os05g0380850 | - | Detail |
| C1H5g05054 | 5:14,891,582-14,892,178 | - | C2H5g18251 | CX5g037649 | LOC_Os05g31620 | Os05g0380900 | - | Detail |
| C1H5g03678 | 5:14,909,056-14,909,574 | - | C2H5g02851 | CX5g036933 | LOC_Os05g31670 | Os05g0381400 | AWPM-19, PM19, OsPM1, OsPM19L1 | Detail |
| C1H5g22192 | 5:14,912,709-14,916,753 | + | C2H5g00812 | CX5g040874 | LOC_Os05g31680 | Os05g0381500 | - | Detail |
| C1H5g26855 | 5:14,928,977-14,932,252 | + | - | CX5g041023 | LOC_Os05g31690 | Os05g0381700 | - | Detail |
| C1H5g18693 | 5:14,960,958-14,963,095 | + | C2H5g07422 | CX5g038575 | LOC_Os05g31710 | Os05g0381900 | - | Detail |
| C1H5g25084 | 5:14,975,576-14,978,892 | + | C2H5g04833 | CX5g040022 | LOC_Os05g31720 | Os05g0382000 | - | Detail |
| C1H5g14307 | 5:14,983,196-14,987,606 | - | C2H5g08328 | CX5g037534 | LOC_Os05g31730 | Os05g0382200 | - | Detail |
| C1H5g04280 | 5:14,993,709-14,995,280 | + | C2H5g19880 | CX5g036798 | LOC_Os05g31740 | Os05g0382500 | CYP94E3, OsCYP94E3 | Detail |
| C1H5g01406 | 5:15,003,520-15,005,185 | - | C2H5g19685 | CX5g040387 | LOC_Os05g31750 | Os05g0382600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025791 | 3:20,904,463-20,905,229 | - | C1H3g23195 | C2H3g26444 | LOC_Os03g39830 | Os03g0595300 | - | Detail |
| CX3g029922 | 3:20,906,527-20,907,591 | - | C1H3g30408 | C2H3g03313 | LOC_Os03g39850 | Os03g0595600 | - | Detail |
| CX3g026613 | 3:20,910,938-20,914,561 | - | C1H3g25743 | C2H3g11519 | LOC_Os03g39860 | Os03g0595800 | - | Detail |
| CX3g031042 | 3:20,918,823-20,919,149 | - | - | - | LOC_Os03g39870 | Os03g0596101 | - | Detail |
| CX3g025071 | 3:20,925,308-20,928,544 | - | C1H3g12058 | C2H3g18490 | LOC_Os03g39910 | Os03g0596400 | - | Detail |
| CX3g027362 | 3:20,940,827-20,941,597 | + | - | - | LOC_Os03g39980 | Os03g0596700 | - | Detail |
| CX3g028577 | 3:20,944,449-20,945,705 | - | C1H3g14608 | C2H3g19432 | LOC_Os03g40000 | Os03g0596800 | - | Detail |
| CX3g029325 | 3:20,946,664-20,953,372 | - | C1H3g14273 | C2H3g02583 | LOC_Os03g40010 | Os03g0596900 | - | Detail |
| CX3g030669 | 3:20,971,763-20,973,991 | - | C1H3g16422 | C2H3g09880 | LOC_Os03g40020 | Os03g0597200 | YSA | Detail |
| CX3g025021 | 3:20,978,698-20,980,117 | - | C1H3g01921 | C2H3g23840 | LOC_Os03g40040 | Os03g0597400 | - | Detail |
| CX3g029448 | 3:20,983,817-20,987,884 | + | C1H3g16396 | C2H3g01791 | LOC_Os03g40060 | Os03g0712600 | - | Detail |
| CX3g028607 | 3:20,988,404-20,990,989 | - | C1H3g07504 | C2H3g25378 | LOC_Os03g40070 | Os03g0597600 | - | Detail |
| CX3g026000 | 3:20,993,123-20,993,743 | + | - | C2H3g10678 | - | Os03g0204366 | - | Detail |
| CX3g026053 | 3:20,996,812-20,997,158 | - | C1H3g17059 | C2H3g15708 | - | Os03g0597800 | - | Detail |
| CX3g030170 | 3:20,999,007-21,000,452 | + | C1H3g28354 | C2H3g03020 | LOC_Os03g40080 | Os03g0690600 | - | Detail |
| CX3g025955 | 3:21,016,696-21,018,695 | + | C1H3g25847 | C2H3g07741 | LOC_Os03g40100 | Os03g0598100 | - | Detail |
| CX3g025103 | 3:21,020,525-21,026,919 | - | C1H3g09764 | C2H3g15953 | LOC_Os03g40110 | Os03g0598200 | - | Detail |
| CX3g025618 | 3:21,034,076-21,035,636 | - | C1H3g00363 | C2H3g29831 | LOC_Os03g40130 | - | - | Detail |
| CX3g028520 | 3:21,070,843-21,071,136 | + | - | - | - | - | - | Detail |
| CX3g030408 | 3:21,089,898-21,091,745 | + | C1H3g19636 | C2H3g27050 | LOC_Os03g40170 | Os03g0598700 | - | Detail |