| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g27418 | 1:17,413,631-17,420,934 | + | C2H1g21312 | CX1g005208 | LOC_Os08g09860 | - | - | Detail |
| C1H1g28314 | 1:17,443,733-17,444,303 | + | C2H1g17187 | CX1g003392 | LOC_Os01g33670 | Os01g0520500 | - | Detail |
| C1H1g02683 | 1:17,445,295-17,450,504 | - | C2H1g08242 | CX1g006219 | LOC_Os01g33684 | Os01g0520600 | - | Detail |
| C1H1g27816 | 1:17,476,223-17,477,466 | + | - | CX1g001522 | LOC_Os01g33762 | Os04g0228300 | - | Detail |
| C1H1g04217 | 1:17,498,928-17,506,747 | + | C2H1g00800 | CX1g002325 | LOC_Os01g33784 | Os01g0521400 | - | Detail |
| C1H1g30357 | 1:17,510,328-17,520,815 | + | C2H1g26145 | CX1g001131 | LOC_Os01g33800 | Os01g0521500 | - | Detail |
| C1H1g25202 | 1:17,537,078-17,538,135 | + | C2H1g21205 | CX1g005107 | LOC_Os01g33910 | Os01g0522100 | - | Detail |
| C1H1g08450 | 1:17,556,024-17,559,721 | + | C2H1g18568 | CX1g005107 | LOC_Os01g33930 | Os01g0522950 | - | Detail |
| C1H1g10941 | 1:17,562,380-17,563,337 | + | C2H1g11782 | CX1g006523 | LOC_Os01g33950 | Os01g0523100 | - | Detail |
| C1H1g21896 | 1:17,564,801-17,565,783 | + | C2H1g11782 | CX1g006523 | LOC_Os01g33950 | Os01g0523100 | - | Detail |
| C1H1g09014 | 1:17,573,170-17,581,097 | + | C2H1g13197 | CX1g005107 | LOC_Os01g34000 | Os01g0524100 | ESA1 | Detail |
| C1H1g03031 | 1:17,609,485-17,611,145 | + | C2H1g22021 | CX1g000293 | LOC_Os01g34060 | Os01g0863300 | - | Detail |
| C1H1g05337 | 1:17,624,574-17,635,162 | + | C2H1g01344 | CX1g003083 | LOC_Os01g34080 | Os01g0524700 | - | Detail |
| C1H1g08661 | 1:17,704,268-17,705,104 | + | C2H1g28979 | - | - | - | - | Detail |
| C1H1g01010 | 1:17,706,879-17,709,624 | + | C2H1g17057 | CX1g002923 | LOC_Os01g34190 | Os01g0526100 | - | Detail |
| C1H1g10979 | 1:17,710,839-17,714,130 | + | C2H1g19688 | CX1g003716 | LOC_Os01g34200 | Os01g0526200 | - | Detail |
| C1H1g28687 | 1:17,745,595-17,761,416 | + | C2H1g06550 | CX1g006793 | LOC_Os01g34330 | Os01g0527400 | - | Detail |
| C1H1g03628 | 1:17,762,560-17,767,791 | - | C2H1g06422 | CX1g000241 | LOC_Os01g34350 | Os01g0527600 | SHL2, shl2, SHL2, sh2, OsRDR6 | Detail |
| C1H1g18093 | 1:17,772,289-17,777,173 | - | C2H1g29503 | CX1g004192 | LOC_Os01g34390 | Os01g0527700 | - | Detail |
| C1H1g30321 | 1:17,779,715-17,791,385 | + | C2H1g02847 | CX1g007113 | LOC_Os01g34430 | Os01g0528000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030820 | 3:20,431,431-20,433,020 | - | C1H3g23323 | C2H3g24653 | LOC_Os03g38800 | Os03g0584400 | - | Detail |
| CX3g025914 | 3:20,435,889-20,436,188 | - | - | - | - | - | - | Detail |
| CX3g025305 | 3:20,438,868-20,443,576 | - | C1H3g31357 | C2H3g10367 | LOC_Os03g37350 | - | - | Detail |
| CX3g029297 | 3:20,443,963-20,444,112 | - | - | - | - | Os01g0728000 | - | Detail |
| CX3g029536 | 3:20,477,809-20,478,341 | - | - | - | - | - | - | Detail |
| CX3g028173 | 3:20,484,381-20,485,502 | + | C1H3g25995 | C2H3g25786 | LOC_Os03g38870 | Os03g0585600 | - | Detail |
| CX3g028633 | 3:20,501,872-20,507,194 | - | C1H3g12087 | C2H3g17956 | LOC_Os03g38930 | Os03g0586300 | - | Detail |
| CX3g026495 | 3:20,509,876-20,511,828 | + | C1H3g08754 | C2H3g00038 | LOC_Os03g38950 | Os03g0586500 | - | Detail |
| CX3g031261 | 3:20,512,631-20,515,985 | - | C1H3g06874 | C2H3g11125 | LOC_Os03g38960 | Os03g0586600 | - | Detail |
| CX3g025709 | 3:20,519,511-20,519,738 | + | - | - | - | - | - | Detail |
| CX3g028836 | 3:20,520,551-20,532,456 | - | C1H3g18468 | C2H3g25834 | LOC_Os03g38970 | Os03g0586700 | PALD | Detail |
| CX3g027203 | 3:20,538,879-20,546,141 | - | C1H3g11741 | C2H3g21968 | LOC_Os03g38980 | Os03g0586800 | - | Detail |
| CX3g026912 | 3:20,546,450-20,552,448 | + | C1H3g27042 | C2H3g04567 | LOC_Os03g38990 | Os03g0586900 | OsPLS2 | Detail |
| CX3g030907 | 3:20,554,488-20,557,172 | + | C1H3g17183 | C2H3g23894 | LOC_Os03g39000 | Os03g0587000 | - | Detail |
| CX3g026983 | 3:20,557,995-20,559,428 | + | C1H3g08966 | C2H3g20201 | LOC_Os03g39010 | Os03g0587100 | - | Detail |
| CX3g025439 | 3:20,560,022-20,565,458 | - | C1H3g03134 | C2H3g30660 | LOC_Os03g39020 | Os03g0587200 | - | Detail |
| CX3g027357 | 3:20,582,496-20,582,753 | - | - | - | - | - | - | Detail |
| CX3g026068 | 3:20,595,547-20,600,183 | + | C1H3g00174 | C2H3g01127 | LOC_Os03g39129 | Os03g0588200 | - | Detail |
| CX3g026504 | 3:20,608,131-20,608,280 | - | - | - | - | - | - | Detail |
| CX3g029498 | 3:20,624,731-20,625,066 | - | - | - | - | - | - | Detail |