| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g07424 | 9:19,218,434-19,222,530 | + | C1H9g13374 | CX9g057785 | LOC_Os09g39220 | Os09g0565600 | - | Detail |
| C2H9g05946 | 9:19,224,305-19,225,510 | + | C1H9g26902 | CX9g055093 | LOC_Os09g39230 | Os09g0565700 | - | Detail |
| C2H9g19055 | 9:19,229,128-19,230,339 | + | C1H9g23958 | CX9g057620 | LOC_Os09g39260 | Os09g0566050 | - | Detail |
| C2H9g15395 | 9:19,231,647-19,237,669 | - | C1H9g25655 | CX9g056260 | LOC_Os09g39270 | Os09g0566100 | - | Detail |
| C2H9g06176 | 9:19,245,063-19,247,290 | - | C1H9g18076 | CX9g056096 | LOC_Os09g39310 | Os09g0567000 | - | Detail |
| C2H9g22038 | 9:19,251,638-19,252,552 | - | C1H9g18076 | CX9g056096 | LOC_Os09g39310 | Os09g0567000 | - | Detail |
| C2H9g09064 | 9:19,256,964-19,263,700 | - | C1H9g21987 | CX9g056096 | LOC_Os09g39320 | Os09g0566550 | - | Detail |
| C2H9g08732 | 9:19,265,273-19,266,640 | - | C1H9g31128 | CX9g056096 | LOC_Os09g39350 | Os09g0567000 | - | Detail |
| C2H9g17992 | 9:19,273,423-19,277,358 | + | C1H9g04890 | CX9g056849 | LOC_Os09g39380 | Os09g0567300 | MDHAR, OsMDHAR, OsMDAR3, OsMDHAR3 | Detail |
| C2H9g25680 | 9:19,277,859-19,280,562 | + | C1H9g13266 | CX9g058049 | LOC_Os09g39390 | Os09g0567366 | - | Detail |
| C2H9g00653 | 9:19,282,863-19,285,337 | + | C1H9g16090 | CX9g056022 | LOC_Os09g39400 | Os09g0567400 | - | Detail |
| C2H9g10548 | 9:19,289,359-19,295,560 | + | C1H9g25909 | CX9g057497 | LOC_Os09g39410 | Os09g0567500 | - | Detail |
| C2H9g15634 | 9:19,296,740-19,301,777 | + | C1H9g01897 | CX9g055257 | LOC_Os09g39420 | Os09g0567700 | - | Detail |
| C2H9g07527 | 9:19,301,792-19,305,375 | - | C1H9g27590 | CX9g058075 | LOC_Os09g39430 | Os09g0567800 | - | Detail |
| C2H9g28844 | 9:19,309,307-19,311,969 | - | C1H9g04610 | CX9g058045 | LOC_Os09g39440 | Os09g0567900 | - | Detail |
| C2H9g14034 | 9:19,314,286-19,318,425 | + | C1H9g06631 | CX9g055030 | LOC_Os09g39462 | Os09g0568000 | - | Detail |
| C2H9g07303 | 9:19,319,765-19,321,171 | + | C1H9g18800 | CX9g055723 | LOC_Os09g39474 | Os09g0568100 | - | Detail |
| C2H9g14146 | 9:19,321,995-19,323,316 | - | C1H9g25533 | CX9g055477 | LOC_Os09g39490 | Os09g0568200 | - | Detail |
| C2H9g28333 | 9:19,333,286-19,334,722 | - | C1H9g27100 | CX9g057377 | LOC_Os09g39540 | Os09g0568800 | - | Detail |
| C2H9g03364 | 9:19,334,994-19,336,916 | + | C1H9g30656 | CX9g055404 | LOC_Os09g39550 | Os09g0568900 | IF1-2, IF<sub>1</sub>-2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001733 | 1:16,423,293-16,423,586 | - | - | - | - | - | - | Detail |
| CX1g003002 | 1:16,424,394-16,425,018 | + | C1H3g00735 | C2H3g30418 | LOC_Os01g31800 | Os01g0502700 | - | Detail |
| CX1g002538 | 1:16,433,960-16,436,739 | - | C1H1g23293 | C2H1g27591 | LOC_Os01g31810 | Os01g0839500 | - | Detail |
| CX1g007137 | 1:16,445,364-16,445,843 | + | - | - | LOC_Os01g31850 | - | - | Detail |
| CX1g001585 | 1:16,455,966-16,466,528 | - | C1H1g30538 | C2H1g03710 | LOC_Os01g31870 | Os01g0503400 | - | Detail |
| CX1g001395 | 1:16,470,792-16,471,040 | + | - | - | - | - | - | Detail |
| CX1g001150 | 1:16,476,742-16,477,410 | + | C1H1g06595 | C2H1g08008 | LOC_Os01g31920 | - | - | Detail |
| CX1g005714 | 1:16,500,572-16,500,721 | - | - | - | - | - | - | Detail |
| CX1g004806 | 1:16,503,621-16,506,900 | - | C1H1g11996 | C2H1g18628 | LOC_Os01g31940 | Os01g0504100 | - | Detail |
| CX1g004576 | 1:16,509,853-16,510,191 | - | - | - | - | - | - | Detail |
| CX1g000186 | 1:16,510,702-16,511,045 | - | - | - | - | - | - | Detail |
| CX1g003197 | 1:16,519,067-16,525,560 | - | C1H1g01852 | C2H1g11121 | LOC_Os01g31980 | Os01g0684900 | - | Detail |
| CX1g005011 | 1:16,543,927-16,544,229 | + | - | - | - | - | - | Detail |
| CX1g002621 | 1:16,549,712-16,549,996 | - | - | - | - | - | - | Detail |
| CX1g001358 | 1:16,553,683-16,557,282 | + | C1H1g02771 | C2H1g17778 | LOC_Os01g32080 | Os01g0505400 | - | Detail |
| CX1g006777 | 1:16,558,530-16,559,993 | - | C1H1g31372 | C2H1g22636 | LOC_Os01g32090 | Os01g0505500 | - | Detail |
| CX1g001435 | 1:16,562,252-16,562,401 | - | - | - | - | Os01g0728000 | - | Detail |
| CX1g004742 | 1:16,563,016-16,563,648 | + | C1H1g07201 | C2H1g30156 | LOC_Os01g32120 | Os01g0505600 | - | Detail |
| CX1g000996 | 1:16,566,741-16,569,674 | + | C1H1g20702 | C2H1g04751 | LOC_Os01g32130 | Os01g0505700 | - | Detail |
| CX1g005476 | 1:16,589,109-16,590,728 | + | C1H1g23126 | C2H1g26570 | LOC_Os01g32170 | Os01g0506100 | OsSOAR1 | Detail |