| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g26147 | 3:29,070,012-29,073,995 | - | C2H3g04730 | CX3g031002 | LOC_Os03g54160 | Os03g0753100 | PAP2, MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2 | Detail |
| C1H3g02420 | 3:29,085,506-29,088,803 | - | C2H3g23019 | CX3g026708 | LOC_Os03g54160 | Os03g0752800 | MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10, RAP1B | Detail |
| C1H3g27451 | 3:29,096,276-29,101,760 | - | C2H3g26552 | CX3g031002 | LOC_Os03g54170 | Os03g0753100 | PAP2, MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2 | Detail |
| C1H3g02242 | 3:29,102,198-29,102,386 | - | C2H3g26951 | CX3g031002 | LOC_Os03g54170 | Os03g0753100 | PAP2, MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2 | Detail |
| C1H3g27471 | 3:29,119,242-29,120,381 | + | C2H3g04287 | CX3g026043 | - | - | - | Detail |
| C1H3g27092 | 3:29,121,877-29,125,562 | - | C2H3g04194 | CX3g027702 | LOC_Os03g54750 | Os03g0754500 | - | Detail |
| C1H3g31483 | 3:29,129,030-29,132,412 | + | C2H3g28760 | CX3g030330 | LOC_Os03g54760 | Os03g0754800 | - | Detail |
| C1H3g01206 | 3:29,134,980-29,139,800 | + | C2H3g21643 | CX3g030692 | LOC_Os03g54770 | Os03g0754900 | - | Detail |
| C1H3g11086 | 3:29,140,364-29,149,350 | + | C2H3g21643 | CX3g030684 | LOC_Os03g54780 | Os03g0755000 | - | Detail |
| C1H3g02500 | 3:29,150,305-29,155,599 | + | C2H3g18088 | CX3g030008 | LOC_Os03g54790 | Os03g0755900 | - | Detail |
| C1H3g16167 | 3:29,158,887-29,161,287 | + | C2H3g29659 | CX3g026242 | LOC_Os03g54870 | Os03g0755600 | - | Detail |
| C1H3g22849 | 3:29,162,291-29,163,604 | + | C2H3g29659 | - | LOC_Os03g54860 | Os03g0755625 | - | Detail |
| C1H3g28843 | 3:29,167,429-29,168,265 | + | C2H3g18088 | CX3g030008 | LOC_Os03g54790 | Os03g0755100 | ALS1, OsALS1, OsABCB25 | Detail |
| C1H3g23278 | 3:29,173,703-29,175,359 | + | C2H3g30501 | CX7g046958 | LOC_Os03g54890 | Os03g0756000 | - | Detail |
| C1H3g18285 | 3:29,177,473-29,182,434 | - | C2H3g18957 | CX3g029420 | LOC_Os03g54900 | Os03g0756200 | - | Detail |
| C1H3g24157 | 3:29,187,079-29,188,859 | - | C2H3g16088 | CX3g031296 | LOC_Os03g54910 | Os03g0756300 | - | Detail |
| C1H3g08569 | 3:29,191,173-29,194,316 | - | C2H3g07304 | CX3g026830 | LOC_Os03g54920 | Os03g0756400 | - | Detail |
| C1H3g25183 | 3:29,195,731-29,202,063 | - | C2H3g22264 | CX3g027104 | LOC_Os03g54930 | Os03g0756500 | - | Detail |
| C1H3g07989 | 3:29,206,938-29,212,229 | - | C2H3g18479 | CX3g027732 | LOC_Os03g54970 | Os03g0756700 | - | Detail |
| C1H3g04866 | 3:29,212,412-29,216,380 | + | C2H3g11581 | CX3g030336 | LOC_Os03g54980 | Os03g0756800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001733 | 1:16,423,293-16,423,586 | - | - | - | - | - | - | Detail |
| CX1g003002 | 1:16,424,394-16,425,018 | + | C1H3g00735 | C2H3g30418 | LOC_Os01g31800 | Os01g0502700 | - | Detail |
| CX1g002538 | 1:16,433,960-16,436,739 | - | C1H1g23293 | C2H1g27591 | LOC_Os01g31810 | Os01g0839500 | - | Detail |
| CX1g007137 | 1:16,445,364-16,445,843 | + | - | - | LOC_Os01g31850 | - | - | Detail |
| CX1g001585 | 1:16,455,966-16,466,528 | - | C1H1g30538 | C2H1g03710 | LOC_Os01g31870 | Os01g0503400 | - | Detail |
| CX1g001395 | 1:16,470,792-16,471,040 | + | - | - | - | - | - | Detail |
| CX1g001150 | 1:16,476,742-16,477,410 | + | C1H1g06595 | C2H1g08008 | LOC_Os01g31920 | - | - | Detail |
| CX1g005714 | 1:16,500,572-16,500,721 | - | - | - | - | - | - | Detail |
| CX1g004806 | 1:16,503,621-16,506,900 | - | C1H1g11996 | C2H1g18628 | LOC_Os01g31940 | Os01g0504100 | - | Detail |
| CX1g004576 | 1:16,509,853-16,510,191 | - | - | - | - | - | - | Detail |
| CX1g000186 | 1:16,510,702-16,511,045 | - | - | - | - | - | - | Detail |
| CX1g003197 | 1:16,519,067-16,525,560 | - | C1H1g01852 | C2H1g11121 | LOC_Os01g31980 | Os01g0684900 | - | Detail |
| CX1g005011 | 1:16,543,927-16,544,229 | + | - | - | - | - | - | Detail |
| CX1g002621 | 1:16,549,712-16,549,996 | - | - | - | - | - | - | Detail |
| CX1g001358 | 1:16,553,683-16,557,282 | + | C1H1g02771 | C2H1g17778 | LOC_Os01g32080 | Os01g0505400 | - | Detail |
| CX1g006777 | 1:16,558,530-16,559,993 | - | C1H1g31372 | C2H1g22636 | LOC_Os01g32090 | Os01g0505500 | - | Detail |
| CX1g001435 | 1:16,562,252-16,562,401 | - | - | - | - | Os01g0728000 | - | Detail |
| CX1g004742 | 1:16,563,016-16,563,648 | + | C1H1g07201 | C2H1g30156 | LOC_Os01g32120 | Os01g0505600 | - | Detail |
| CX1g000996 | 1:16,566,741-16,569,674 | + | C1H1g20702 | C2H1g04751 | LOC_Os01g32130 | Os01g0505700 | - | Detail |
| CX1g005476 | 1:16,589,109-16,590,728 | + | C1H1g23126 | C2H1g26570 | LOC_Os01g32170 | Os01g0506100 | OsSOAR1 | Detail |