| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02875 | 4:26,302,924-26,308,851 | - | C2H4g27441 | CX4g033004 | LOC_Os04g51060 | Os02g0700000 | - | Detail |
| C1H4g14973 | 4:26,312,350-26,314,658 | - | C2H4g22306 | CX4g034139 | LOC_Os04g51070 | Os04g0599300 | EAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD | Detail |
| C1H4g26976 | 4:26,320,393-26,326,056 | + | C2H4g03863 | CX4g034652 | LOC_Os04g51080 | Os04g0599400 | - | Detail |
| C1H4g19631 | 4:26,329,325-26,343,393 | + | C2H4g03311 | CX4g033723 | LOC_Os04g51090 | Os04g0599650 | - | Detail |
| C1H4g29659 | 4:26,344,218-26,347,164 | + | C2H4g27597 | CX4g035416 | LOC_Os04g51100 | Os04g0599700 | - | Detail |
| C1H4g20555 | 4:26,347,861-26,350,745 | + | C2H4g20047 | CX4g033831 | LOC_Os04g51110 | Os04g0599800 | CDC20.1 | Detail |
| C1H4g01630 | 4:26,351,212-26,356,239 | + | C2H4g05473 | CX4g035744 | LOC_Os04g51120 | Os04g0599900 | - | Detail |
| C1H4g04836 | 4:26,358,923-26,360,679 | + | C2H4g10442 | CX4g035030 | LOC_Os04g51130 | Os04g0600000 | - | Detail |
| C1H4g15893 | 4:26,361,500-26,362,604 | - | C2H4g25284 | CX4g035889 | LOC_Os04g51140 | Os04g0600100 | - | Detail |
| C1H4g02523 | 4:26,362,851-26,365,153 | - | C2H4g12319 | CX4g035681 | LOC_Os04g51150 | Os04g0600200 | AOX1A, Ao1-1, AOX1a, OsAOX1a, AOX 1a | Detail |
| C1H4g17466 | 4:26,365,907-26,367,375 | - | C2H4g13155 | - | - | - | - | Detail |
| C1H4g06092 | 4:26,367,600-26,368,805 | - | C2H4g13155 | CX4g036218 | LOC_Os04g51160 | Os04g0600300 | AOX1B, AOX1b, OsAOX1b | Detail |
| C1H4g28733 | 4:26,370,683-26,372,967 | - | C2H4g11382 | CX4g036257 | LOC_Os04g51166 | Os04g0600400 | - | Detail |
| C1H4g27697 | 4:26,373,814-26,374,512 | - | C2H4g16073 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C1H4g04973 | 4:26,374,598-26,379,006 | - | C2H4g16073 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C1H4g07853 | 4:26,386,694-26,391,407 | - | C2H4g00138 | CX4g032625 | LOC_Os04g51180 | Os04g0600800 | COLD1 | Detail |
| C1H4g08504 | 4:26,392,836-26,396,991 | - | C2H4g09942 | CX4g033956 | LOC_Os04g51190 | Os04g0574500 | - | Detail |
| C1H4g18677 | 4:26,408,952-26,410,318 | - | C2H4g25560 | CX4g032272 | LOC_Os04g51240 | Os04g0601400 | - | Detail |
| C1H4g11359 | 4:26,411,776-26,413,423 | - | C2H4g10254 | CX4g033025 | LOC_Os04g51250 | Os04g0601500 | - | Detail |
| C1H4g04413 | 4:26,413,308-26,414,261 | + | C2H4g14874 | CX4g034624 | LOC_Os04g51290 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030172 | 3:20,294,066-20,297,287 | + | C1H3g23142 | C2H3g11586 | LOC_Os03g38480 | Os03g0762900 | - | Detail |
| CX3g031329 | 3:20,299,977-20,300,396 | + | - | - | - | - | - | Detail |
| CX3g027290 | 3:20,301,278-20,303,251 | + | C1H3g26388 | C2H3g06589 | LOC_Os03g38490 | Os03g0581600 | - | Detail |
| CX3g028189 | 3:20,314,110-20,314,361 | + | - | - | - | - | - | Detail |
| CX3g026435 | 3:20,314,946-20,315,686 | + | C1H3g13237 | C2H3g11410 | LOC_Os03g38500 | Os03g0581650 | - | Detail |
| CX3g028447 | 3:20,321,949-20,322,503 | + | C1H3g17977 | C2H3g06922 | LOC_Os03g38520 | Os03g0581800 | - | Detail |
| CX3g027412 | 3:20,330,869-20,332,453 | + | C1H3g14219 | C2H3g10966 | LOC_Os03g38540 | Os03g0582000 | - | Detail |
| CX3g028106 | 3:20,333,753-20,335,705 | - | C1H3g04338 | C2H3g04652 | LOC_Os03g38580 | Os03g0582100 | - | Detail |
| CX3g025759 | 3:20,339,242-20,342,298 | - | C1H3g18500 | C2H3g02001 | LOC_Os03g38590 | Os03g0582200 | - | Detail |
| CX3g029015 | 3:20,350,897-20,351,646 | - | C1H3g02242 | C2H3g26951 | LOC_Os03g38610 | Os03g0582400 | MADS87, OsMADS87 | Detail |
| CX3g028228 | 3:20,379,682-20,380,884 | + | - | - | LOC_Os03g38640 | Os03g0582800 | - | Detail |
| CX3g028120 | 3:20,383,137-20,383,346 | + | - | - | - | Os03g0582900 | - | Detail |
| CX3g029359 | 3:20,383,923-20,385,900 | + | C1H3g13726 | C2H3g25116 | - | - | - | Detail |
| CX3g028203 | 3:20,386,883-20,389,504 | - | C1H3g28190 | C2H3g00374 | LOC_Os03g38710 | Os03g0583600 | OsPERK3 | Detail |
| CX3g030262 | 3:20,392,654-20,392,908 | - | C1H12g24303 | - | LOC_Os10g02314 | - | - | Detail |
| CX3g026919 | 3:20,393,535-20,396,644 | + | C1H3g03200 | C2H3g24537 | LOC_Os03g38720 | Os03g0583700 | OsUMP1 | Detail |
| CX3g030948 | 3:20,402,244-20,404,330 | + | C1H3g23310 | C2H3g24800 | LOC_Os03g38730 | Os03g0583800 | - | Detail |
| CX3g030903 | 3:20,405,095-20,408,190 | - | C1H3g04436 | C2H3g29289 | LOC_Os03g38740 | Os03g0583900 | - | Detail |
| CX3g025333 | 3:20,409,037-20,416,823 | - | C1H3g04436 | C2H3g29289 | LOC_Os03g38740 | Os03g0583900 | - | Detail |
| CX3g028700 | 3:20,428,212-20,430,599 | + | C1H3g11527 | C2H3g13791 | LOC_Os03g38790 | Os03g0568500 | - | Detail |