| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g10870 | 5:2,764,057-2,769,694 | - | C1H5g01429 | CX5g037873 | LOC_Os05g06350 | Os05g0155601 | Imp a1b, Imp3 | Detail |
| C2H5g10571 | 5:2,772,256-2,777,648 | + | C1H5g05444 | CX5g036886 | LOC_Os05g06360 | Os05g0155700 | - | Detail |
| C2H5g29906 | 5:2,783,261-2,784,652 | + | C1H5g08048 | CX5g040299 | LOC_Os05g06380 | Os05g0155800 | - | Detail |
| C2H5g30592 | 5:2,792,434-2,793,738 | + | C1H5g08048 | CX5g040434 | LOC_Os05g06380 | Os05g0155800 | - | Detail |
| C2H5g22135 | 5:2,799,478-2,802,268 | + | C1H5g20577 | CX5g040720 | LOC_Os05g06420 | Os05g0156200 | - | Detail |
| C2H5g24185 | 5:2,804,420-2,807,812 | - | C1H5g09510 | CX5g039738 | LOC_Os05g06430 | Os05g0156300 | - | Detail |
| C2H5g26310 | 5:2,815,955-2,820,288 | + | C1H5g09608 | CX5g036765 | LOC_Os05g06440 | Os05g0156500 | - | Detail |
| C2H5g19277 | 5:2,820,449-2,825,519 | - | C1H5g14046 | CX5g037146 | LOC_Os05g06450 | Os05g0156600 | - | Detail |
| C2H5g05970 | 5:2,827,521-2,834,014 | - | C1H5g24964 | CX5g038153 | LOC_Os05g06460 | Os05g0156700 | OsLPD1 | Detail |
| C2H5g20269 | 5:2,838,758-2,850,343 | + | C1H5g24978 | CX5g038021 | LOC_Os05g06470 | Os05g0156800 | - | Detail |
| C2H5g09414 | 5:2,851,034-2,855,117 | - | C1H5g24292 | CX5g037368 | LOC_Os05g06480 | Os05g0156900 | Chalk5 | Detail |
| C2H5g11758 | 5:2,860,791-2,863,087 | - | C1H5g00102 | CX5g037609 | LOC_Os05g06500 | Os05g0157200 | - | Detail |
| C2H5g06394 | 5:2,864,710-2,868,737 | - | C1H5g31378 | CX5g036870 | LOC_Os05g06510 | Os05g0157300 | - | Detail |
| C2H5g00238 | 5:2,873,275-2,874,014 | + | C1H5g16317 | CX5g039713 | LOC_Os05g06650 | Os05g0158400 | - | Detail |
| C2H5g01907 | 5:2,874,310-2,876,762 | + | C1H5g16317 | CX5g039713 | LOC_Os05g06630 | Os05g0158200 | - | Detail |
| C2H5g29731 | 5:2,882,126-2,886,279 | + | C1H5g16317 | CX5g040970 | LOC_Os05g06540 | Os05g0157600 | - | Detail |
| C2H5g15119 | 5:2,938,106-2,941,501 | + | C1H5g16317 | CX5g038380 | LOC_Os05g06630 | Os05g0158200 | - | Detail |
| C2H5g22849 | 5:2,947,907-2,951,658 | + | C1H5g05673 | CX5g039850 | LOC_Os05g06650 | Os05g0158400 | - | Detail |
| C2H5g05727 | 5:2,952,931-2,957,012 | - | C1H5g28371 | CX5g037102 | LOC_Os05g06660 | Os05g0158500 | GS5, OsSCP26 | Detail |
| C2H5g19140 | 5:2,973,259-2,979,155 | + | C1H5g06427 | CX5g037159 | LOC_Os05g06670 | Os05g0158600 | GA2OX1, OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026824 | 3:15,435,031-15,437,838 | + | C1H3g13446 | C2H3g28547 | LOC_Os03g29810 | Os03g0411500 | VYL, OsClpP6, ClpP6, CLP6 | Detail |
| CX3g028485 | 3:15,439,239-15,441,064 | + | C1H3g17384 | C2H3g05086 | LOC_Os03g29830 | Os03g0411600 | - | Detail |
| CX3g026254 | 3:15,447,964-15,451,988 | - | C1H3g16278 | C2H3g03300 | LOC_Os03g29850 | Os03g0411800 | - | Detail |
| CX3g025249 | 3:15,486,635-15,491,017 | + | C1H3g01152 | C2H3g18598 | LOC_Os03g29910 | Os03g0412200 | - | Detail |
| CX3g027118 | 3:15,497,323-15,498,193 | + | C1H3g29513 | C2H3g25598 | LOC_Os03g29920 | Os03g0412300 | - | Detail |
| CX3g026464 | 3:15,503,089-15,503,973 | - | C1H3g14020 | C2H3g13302 | LOC_Os03g29930 | Os03g0412400 | - | Detail |
| CX3g027848 | 3:15,507,527-15,507,883 | - | - | C2H12g28081 | LOC_Os01g54740 | Os06g0629362 | - | Detail |
| CX3g026817 | 3:15,522,966-15,526,393 | + | C1H3g23937 | C2H3g28011 | LOC_Os03g29950 | Os03g0412800 | - | Detail |
| CX3g030482 | 3:15,544,040-15,550,026 | + | C1H3g13193 | C2H3g06222 | LOC_Os03g29960 | Os03g0412900 | - | Detail |
| CX3g027945 | 3:15,551,274-15,551,981 | - | - | - | - | - | - | Detail |
| CX3g029713 | 3:15,561,408-15,564,398 | + | C1H3g10486 | C2H3g21811 | LOC_Os03g29980 | Os03g0413100 | - | Detail |
| CX3g028025 | 3:15,564,931-15,565,485 | + | - | - | - | - | - | Detail |
| CX3g028183 | 3:15,574,170-15,580,479 | - | C1H3g17935 | C2H3g29744 | LOC_Os03g30000 | Os03g0413400 | - | Detail |
| CX3g027439 | 3:15,599,950-15,600,198 | + | - | - | - | - | - | Detail |
| CX3g030098 | 3:15,611,210-15,611,461 | + | - | - | - | - | - | Detail |
| CX3g030572 | 3:15,612,626-15,613,711 | - | - | - | LOC_Os03g30060 | Os03g0414100 | - | Detail |
| CX3g027342 | 3:15,630,299-15,631,328 | - | C1H3g00999 | - | LOC_Os03g30092 | Os03g0414400 | OsHCF222 | Detail |
| CX3g027205 | 3:15,633,290-15,633,532 | + | - | - | - | - | - | Detail |
| CX3g026035 | 3:15,662,310-15,663,101 | + | C1H3g09941 | C2H3g13977 | LOC_Os03g30120 | Os03g0414900 | - | Detail |
| CX3g029525 | 3:15,668,677-15,668,874 | + | - | - | - | - | - | Detail |