| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g30676 | 3:20,784,935-20,789,025 | + | C1H3g31743 | CX3g027969 | LOC_Os03g40540 | Os03g0602300 | OsBRD1, OsDWARF | Detail |
| C2H3g17661 | 3:20,794,087-20,799,178 | + | C1H3g17649 | CX3g026097 | LOC_Os03g40550 | Os03g0602600 | HSA1, OsFLN2, HSA1/OsFLN2 | Detail |
| C2H3g06081 | 3:20,802,911-20,808,131 | - | C1H3g14588 | CX3g026160 | LOC_Os03g40610 | Os03g0603100 | - | Detail |
| C2H3g09028 | 3:20,872,653-20,876,352 | + | C1H3g26758 | CX3g029684 | LOC_Os03g40670 | Os03g0603600 | - | Detail |
| C2H3g19200 | 3:20,924,799-20,925,579 | + | C1H3g15118 | CX3g029136 | - | Os03g0789600 | - | Detail |
| C2H3g23447 | 3:20,937,852-20,939,276 | + | C1H3g27392 | CX3g025313 | LOC_Os03g40770 | Os03g0604566 | - | Detail |
| C2H3g01476 | 3:20,940,772-20,946,213 | - | C1H3g29572 | CX3g029068 | LOC_Os03g40780 | Os03g0604600 | - | Detail |
| C2H3g29089 | 3:20,994,865-20,996,867 | - | C1H3g15527 | CX3g025804 | LOC_Os03g40930 | Os03g0606100 | - | Detail |
| C2H3g00163 | 3:21,042,269-21,044,985 | - | C1H3g29161 | CX3g025127 | LOC_Os03g41064 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| C2H3g26892 | 3:21,057,321-21,057,773 | - | C1H3g01431 | - | LOC_Os03g41050 | Os03g0607100 | - | Detail |
| C2H3g02928 | 3:21,058,798-21,059,152 | - | C1H3g01550 | CX3g027262 | LOC_Os03g41060 | Os03g0607200 | - | Detail |
| C2H3g23130 | 3:21,068,563-21,070,046 | - | C1H12g22810 | - | - | - | - | Detail |
| C2H3g22608 | 3:21,085,564-21,088,849 | - | C1H3g28561 | CX3g025127 | LOC_Os03g41070 | Os03g0607400 | - | Detail |
| C2H3g05599 | 3:21,090,319-21,095,973 | + | C1H3g18716 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C2H3g06432 | 3:21,097,436-21,097,702 | + | C1H3g08205 | CX3g026140 | - | - | - | Detail |
| C2H3g18057 | 3:21,100,668-21,115,704 | + | C1H3g15026 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C2H3g23306 | 3:21,116,126-21,117,088 | - | C1H3g16629 | CX3g027100 | - | Os03g0653900 | - | Detail |
| C2H3g00656 | 3:21,209,983-21,210,727 | + | - | - | - | - | - | Detail |
| C2H3g10659 | 3:21,214,357-21,222,145 | - | C1H3g05229 | CX3g025340 | - | Os03g0680100 | - | Detail |
| C2H3g06565 | 3:21,284,912-21,286,026 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026877 | 3:15,211,770-15,215,340 | + | C1H3g31034 | C2H3g23059 | LOC_Os03g29340 | Os03g0406900 | OsMac4 | Detail |
| CX3g030450 | 3:15,214,980-15,222,829 | - | C1H3g30818 | C2H3g26359 | LOC_Os03g29350 | Os03g0407000 | - | Detail |
| CX3g026274 | 3:15,245,834-15,251,336 | - | C1H3g12617 | C2H3g08674 | - | Os03g0407400 | GS3 | Detail |
| CX3g026747 | 3:15,258,745-15,259,799 | - | - | - | - | - | - | Detail |
| CX3g025160 | 3:15,264,471-15,267,808 | - | C1H3g17471 | C2H3g00647 | LOC_Os03g29410 | Os03g0407900 | - | Detail |
| CX3g026944 | 3:15,290,557-15,290,997 | + | C1H2g00014 | - | LOC_Os03g29460 | Os03g0408300 | - | Detail |
| CX3g027064 | 3:15,298,388-15,303,219 | + | C1H3g10731 | C2H3g15951 | LOC_Os03g29470 | Os03g0408500 | - | Detail |
| CX3g025952 | 3:15,305,898-15,307,536 | - | C1H3g25797 | - | LOC_Os03g29480 | Os03g0408600 | NSP1, Os NSP1, NSP1 | Detail |
| CX3g029761 | 3:15,332,376-15,333,288 | - | C1H3g30334 | C2H3g24060 | LOC_Os03g29540 | Os03g0409100 | - | Detail |
| CX3g026777 | 3:15,337,295-15,341,542 | - | C1H3g31871 | C2H3g04400 | LOC_Os03g29570 | Os03g0409400 | - | Detail |
| CX3g031255 | 3:15,343,358-15,345,703 | + | C1H3g21807 | C2H3g25735 | LOC_Os03g29584 | - | - | Detail |
| CX3g026419 | 3:15,359,350-15,359,946 | - | C1H3g05344 | C2H3g22866 | - | Os03g0335100 | - | Detail |
| CX3g031178 | 3:15,360,644-15,363,953 | + | C1H3g12159 | C2H3g24065 | LOC_Os03g29630 | Os03g0410100 | - | Detail |
| CX3g028823 | 3:15,368,452-15,368,697 | + | - | - | - | - | - | Detail |
| CX3g026992 | 3:15,377,536-15,377,880 | - | C1H3g17148 | C2H3g24471 | LOC_Os03g29680 | Os03g0410300 | - | Detail |
| CX3g028649 | 3:15,391,579-15,394,437 | - | C1H3g03774 | C2H3g16726 | LOC_Os03g29730 | Os03g0410700 | - | Detail |
| CX3g029764 | 3:15,394,688-15,396,811 | + | C1H3g16818 | C2H3g26637 | LOC_Os03g29740 | Os03g0410900 | - | Detail |
| CX3g026328 | 3:15,403,611-15,409,222 | + | C1H3g23163 | C2H3g25819 | LOC_Os03g29750 | Os03g0411000 | - | Detail |
| CX3g029428 | 3:15,421,531-15,424,907 | + | C1H3g09595 | C2H3g03408 | LOC_Os03g29760 | Os03g0411100 | - | Detail |
| CX3g027514 | 3:15,427,361-15,427,840 | - | - | - | LOC_Os03g29770 | Os03g0411300 | - | Detail |