| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g03703 | 3:9,006,778-9,009,726 | - | C1H3g30760 | CX3g027341 | LOC_Os03g18220 | Os03g0293500 | Ospdc2, PDC2 | Detail |
| C2H3g11690 | 3:9,009,998-9,011,311 | + | - | - | - | - | - | Detail |
| C2H3g08331 | 3:9,019,213-9,019,422 | - | C1H3g18943 | CX3g027094 | LOC_Os03g18250 | Os03g0293700 | - | Detail |
| C2H3g19683 | 3:9,019,437-9,019,757 | - | C1H3g20557 | CX3g026319 | LOC_Os03g18250 | Os03g0293700 | - | Detail |
| C2H3g29031 | 3:9,024,622-9,025,873 | - | C1H3g18167 | CX3g027241 | LOC_Os03g18290 | Os03g0294032 | - | Detail |
| C2H3g30268 | 3:9,027,368-9,029,461 | + | C1H3g14801 | CX3g028794 | LOC_Os03g18300 | Os03g0294100 | - | Detail |
| C2H3g05313 | 3:9,030,481-9,043,357 | + | C1H3g25931 | CX3g028900 | LOC_Os03g18310 | Os03g0294200 | OsF2KP2, FLO23 | Detail |
| C2H3g04577 | 3:9,051,518-9,052,437 | + | C1H3g00522 | CX3g027503 | LOC_Os03g18340 | - | - | Detail |
| C2H3g01948 | 3:9,054,014-9,058,404 | - | C1H3g23335 | CX3g028771 | LOC_Os03g18350 | Os03g0294600 | - | Detail |
| C2H3g16769 | 3:9,068,071-9,072,726 | + | C1H3g31328 | CX3g027365 | LOC_Os03g18360 | Os03g0294700 | OsETOL1, OsSTA97 | Detail |
| C2H3g29602 | 3:9,075,493-9,078,907 | - | C1H3g11627 | CX3g025695 | LOC_Os03g18370 | Os03g0294800 | - | Detail |
| C2H3g22783 | 3:9,082,233-9,088,594 | - | C1H3g24108 | CX3g025838 | LOC_Os03g18380 | Os03g0294900 | - | Detail |
| C2H3g30641 | 3:9,089,377-9,094,160 | - | C1H3g20168 | CX3g025257 | LOC_Os03g18410 | Os03g0295400 | - | Detail |
| C2H3g21153 | 3:9,094,288-9,097,851 | + | C1H3g08126 | CX3g028581 | LOC_Os03g18420 | Os03g0295500 | - | Detail |
| C2H3g02295 | 3:9,100,743-9,104,215 | - | C1H3g20275 | CX3g030446 | LOC_Os03g18430 | Os03g0295600 | - | Detail |
| C2H3g07925 | 3:9,110,098-9,121,516 | + | C1H3g31205 | CX3g025269 | LOC_Os03g18440 | Os03g0295700 | - | Detail |
| C2H3g21710 | 3:9,121,764-9,123,204 | - | C1H3g26210 | CX3g031348 | LOC_Os03g18454 | Os03g0295800 | - | Detail |
| C2H3g11997 | 3:9,125,149-9,125,427 | - | C1H3g13974 | CX3g027991 | LOC_Os03g18454 | Os03g0295800 | - | Detail |
| C2H3g28045 | 3:9,126,054-9,127,955 | - | C1H3g12024 | CX3g025833 | LOC_Os03g18470 | Os03g0295866 | - | Detail |
| C2H3g22218 | 3:9,129,284-9,132,179 | - | C1H3g21811 | CX3g028946 | LOC_Os03g18480 | Os03g0296000 | OsTDF1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004047 | 1:1,175,168-1,177,763 | - | C1H1g19697 | C2H1g15386 | LOC_Os01g03630 | Os01g0127000 | OsLPR3 | Detail |
| CX1g000607 | 1:1,187,222-1,189,567 | - | C1H1g19697 | C2H1g15386 | LOC_Os01g03630 | Os01g0127000 | OsLPR3 | Detail |
| CX1g000136 | 1:1,193,385-1,196,162 | - | C1H1g14698 | C2H1g06554 | LOC_Os01g03640 | Os01g0127200 | OsLPR5, OsSTA2 | Detail |
| CX1g005762 | 1:1,201,615-1,205,416 | - | C1H1g30854 | C2H1g21958 | LOC_Os01g03650 | Os01g0127300 | - | Detail |
| CX1g003465 | 1:1,205,216-1,208,037 | + | C1H1g00412 | C2H1g24576 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| CX1g002042 | 1:1,209,502-1,210,188 | + | C1H1g25838 | C2H1g17865 | LOC_Os01g03720 | Os01g0127450 | - | Detail |
| CX1g005179 | 1:1,210,718-1,211,814 | + | C1H1g17663 | C2H1g02319 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| CX1g002886 | 1:1,212,718-1,213,284 | + | C1H1g11231 | C2H1g19770 | LOC_Os01g03680 | Os01g0127600 | - | Detail |
| CX1g006285 | 1:1,215,545-1,218,614 | + | C1H1g05668 | C2H1g03781 | LOC_Os01g03690 | Os01g0115500 | - | Detail |
| CX1g000778 | 1:1,222,670-1,223,032 | - | - | - | - | - | - | Detail |
| CX1g004218 | 1:1,226,221-1,231,285 | + | C1H1g08835 | C2H1g13836 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| CX1g002896 | 1:1,241,591-1,242,821 | - | C1H1g25654 | C2H1g25959 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| CX1g004405 | 1:1,254,914-1,256,433 | - | C1H1g31764 | C2H1g01385 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| CX1g004550 | 1:1,257,421-1,259,962 | + | C1H1g04042 | C2H1g18960 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| CX1g002239 | 1:1,260,568-1,262,777 | - | C1H1g30874 | C2H1g15883 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| CX1g006333 | 1:1,262,999-1,267,553 | - | C1H1g07436 | C2H1g19347 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| CX1g003593 | 1:1,272,777-1,273,109 | - | - | - | LOC_Os01g03810 | Os01g0128700 | - | Detail |
| CX1g003056 | 1:1,273,740-1,280,290 | + | C1H1g20521 | C2H1g18545 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| CX1g000911 | 1:1,287,622-1,287,804 | + | - | - | - | Os04g0162701 | - | Detail |
| CX1g002103 | 1:1,293,173-1,294,579 | + | C1H1g27481 | C2H1g10390 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |