| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g23906 | 1:3,381,483-3,385,918 | - | C1H1g05589 | CX1g001976 | LOC_Os01g08020 | Os01g0175600 | BOR2, OsBOR2, OsBOR3 | Detail |
| C2H1g04507 | 1:3,398,823-3,403,477 | - | C1H1g28606 | CX1g006212 | LOC_Os01g08020 | Os01g0175700 | BOR2, OsBOR2, OsBOR3 | Detail |
| C2H1g23380 | 1:3,413,356-3,414,660 | - | C1H1g24276 | CX1g003747 | LOC_Os01g08090 | Os01g0175850 | - | Detail |
| C2H1g06989 | 1:3,415,463-3,415,867 | - | C1H1g02538 | CX1g003747 | LOC_Os01g08110 | Os01g0175850 | - | Detail |
| C2H1g10547 | 1:3,417,407-3,418,830 | + | C1H1g24276 | CX1g006769 | LOC_Os01g08090 | Os01g0176000 | - | Detail |
| C2H1g11095 | 1:3,421,993-3,423,776 | + | C1H1g30308 | CX1g003023 | LOC_Os01g08100 | Os01g0176100 | - | Detail |
| C2H1g17460 | 1:3,425,241-3,426,876 | + | C1H1g02538 | CX1g005553 | LOC_Os01g08110 | Os01g0176200 | - | Detail |
| C2H1g07226 | 1:3,428,224-3,430,095 | - | C1H1g07070 | CX1g004833 | LOC_Os01g08120 | Os01g0176300 | - | Detail |
| C2H1g17877 | 1:3,433,400-3,438,193 | + | C1H1g22640 | CX1g005143 | LOC_Os01g08140 | Os01g0176400 | - | Detail |
| C2H1g05536 | 1:3,438,244-3,441,512 | - | C1H1g06103 | CX1g005306 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| C2H1g25065 | 1:3,452,030-3,453,892 | + | C1H1g20288 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C2H1g28512 | 1:3,457,558-3,460,824 | + | - | CX1g002845 | LOC_Os01g08170 | Os01g0176800 | - | Detail |
| C2H1g06706 | 1:3,461,330-3,462,703 | - | C1H1g31422 | CX1g005369 | LOC_Os01g08180 | Os01g0176900 | - | Detail |
| C2H1g26258 | 1:3,472,856-3,481,479 | + | C1H1g14865 | CX1g004627 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| C2H1g16195 | 1:3,483,355-3,492,235 | + | C1H1g25960 | CX1g003518 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| C2H1g03295 | 1:3,501,968-3,503,204 | - | C1H1g22558 | CX1g003748 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| C2H1g21612 | 1:3,517,183-3,518,727 | + | C1H9g14927 | CX1g001472 | LOC_Os01g20190 | Os06g0474600 | - | Detail |
| C2H1g12398 | 1:3,535,939-3,545,731 | - | C1H1g04757 | CX1g004229 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| C2H1g19074 | 1:3,553,284-3,558,271 | - | C1H1g28750 | CX1g004531 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| C2H1g18970 | 1:3,559,896-3,563,139 | + | C1H1g30727 | CX1g004172 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004047 | 1:1,175,168-1,177,763 | - | C1H1g19697 | C2H1g15386 | LOC_Os01g03630 | Os01g0127000 | OsLPR3 | Detail |
| CX1g000607 | 1:1,187,222-1,189,567 | - | C1H1g19697 | C2H1g15386 | LOC_Os01g03630 | Os01g0127000 | OsLPR3 | Detail |
| CX1g000136 | 1:1,193,385-1,196,162 | - | C1H1g14698 | C2H1g06554 | LOC_Os01g03640 | Os01g0127200 | OsLPR5, OsSTA2 | Detail |
| CX1g005762 | 1:1,201,615-1,205,416 | - | C1H1g30854 | C2H1g21958 | LOC_Os01g03650 | Os01g0127300 | - | Detail |
| CX1g003465 | 1:1,205,216-1,208,037 | + | C1H1g00412 | C2H1g24576 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| CX1g002042 | 1:1,209,502-1,210,188 | + | C1H1g25838 | C2H1g17865 | LOC_Os01g03720 | Os01g0127450 | - | Detail |
| CX1g005179 | 1:1,210,718-1,211,814 | + | C1H1g17663 | C2H1g02319 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| CX1g002886 | 1:1,212,718-1,213,284 | + | C1H1g11231 | C2H1g19770 | LOC_Os01g03680 | Os01g0127600 | - | Detail |
| CX1g006285 | 1:1,215,545-1,218,614 | + | C1H1g05668 | C2H1g03781 | LOC_Os01g03690 | Os01g0115500 | - | Detail |
| CX1g000778 | 1:1,222,670-1,223,032 | - | - | - | - | - | - | Detail |
| CX1g004218 | 1:1,226,221-1,231,285 | + | C1H1g08835 | C2H1g13836 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| CX1g002896 | 1:1,241,591-1,242,821 | - | C1H1g25654 | C2H1g25959 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| CX1g004405 | 1:1,254,914-1,256,433 | - | C1H1g31764 | C2H1g01385 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| CX1g004550 | 1:1,257,421-1,259,962 | + | C1H1g04042 | C2H1g18960 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| CX1g002239 | 1:1,260,568-1,262,777 | - | C1H1g30874 | C2H1g15883 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| CX1g006333 | 1:1,262,999-1,267,553 | - | C1H1g07436 | C2H1g19347 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| CX1g003593 | 1:1,272,777-1,273,109 | - | - | - | LOC_Os01g03810 | Os01g0128700 | - | Detail |
| CX1g003056 | 1:1,273,740-1,280,290 | + | C1H1g20521 | C2H1g18545 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| CX1g000911 | 1:1,287,622-1,287,804 | + | - | - | - | Os04g0162701 | - | Detail |
| CX1g002103 | 1:1,293,173-1,294,579 | + | C1H1g27481 | C2H1g10390 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |