| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g00682 | 4:22,107,214-22,120,572 | - | C2H4g08751 | CX4g032669 | LOC_Os04g42784 | Os04g0507000 | - | Detail |
| C1H4g13723 | 4:22,121,600-22,123,030 | - | C2H4g06679 | CX4g035355 | LOC_Os04g42800 | - | - | Detail |
| C1H4g11839 | 4:22,125,091-22,126,532 | - | C2H4g07568 | CX4g032324 | LOC_Os04g42830 | Os04g0507400 | - | Detail |
| C1H4g04437 | 4:22,128,588-22,130,363 | - | C2H4g22062 | CX4g036634 | LOC_Os04g42830 | Os04g0507400 | - | Detail |
| C1H4g00145 | 4:22,131,655-22,143,064 | - | C2H4g14077 | CX4g034196 | LOC_Os04g42840 | Os04g0507500 | - | Detail |
| C1H4g01460 | 4:22,147,105-22,147,449 | - | C2H4g29137 | - | - | - | - | Detail |
| C1H4g16892 | 4:22,148,297-22,148,728 | - | C2H4g00465 | - | LOC_Os04g42850 | - | - | Detail |
| C1H4g02011 | 4:22,154,340-22,157,959 | + | C2H4g23428 | CX4g033250 | LOC_Os04g42860 | Os04g0507700 | - | Detail |
| C1H4g25437 | 4:22,158,560-22,160,458 | - | C2H4g12434 | CX4g036242 | LOC_Os04g42870 | Os04g0507800 | - | Detail |
| C1H4g05518 | 4:22,160,633-22,166,609 | + | C2H4g04255 | CX4g032853 | LOC_Os04g42880 | Os04g0507900 | - | Detail |
| C1H4g12307 | 4:22,167,762-22,170,801 | - | C2H4g02916 | CX4g033139 | LOC_Os04g42900 | Os04g0508000 | - | Detail |
| C1H4g06876 | 4:22,171,372-22,174,491 | + | C2H4g04232 | CX4g032690 | LOC_Os04g42910 | Os04g0508100 | - | Detail |
| C1H4g08533 | 4:22,175,197-22,180,991 | + | C2H4g05860 | CX4g033875 | LOC_Os04g42920 | Os04g0508200 | - | Detail |
| C1H4g17316 | 4:22,182,309-22,184,898 | + | C2H4g05577 | CX4g035105 | LOC_Os04g42930 | Os04g0508300 | OsGrxC2.2 | Detail |
| C1H4g28976 | 4:22,189,985-22,192,008 | - | C2H4g24307 | CX4g036081 | LOC_Os04g42950 | Os04g0508500 | Os2R_MYB45 | Detail |
| C1H4g09744 | 4:22,205,334-22,209,302 | - | C2H4g15606 | CX4g031554 | LOC_Os04g42980 | Os04g0508800 | - | Detail |
| C1H4g09860 | 4:22,214,007-22,219,452 | - | C2H4g18756 | CX4g035042 | LOC_Os04g42990 | Os04g0508900 | - | Detail |
| C1H4g03726 | 4:22,227,610-22,233,055 | + | C2H4g21092 | CX4g031481 | LOC_Os04g43020 | Os04g0509000 | - | Detail |
| C1H4g25656 | 4:22,233,880-22,241,374 | + | C2H4g17989 | CX4g035238 | LOC_Os04g43030 | Os04g0509100 | - | Detail |
| C1H4g05629 | 4:22,242,708-22,244,741 | - | C2H4g25209 | CX4g036052 | LOC_Os04g43040 | Os04g0509200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004047 | 1:1,175,168-1,177,763 | - | C1H1g19697 | C2H1g15386 | LOC_Os01g03630 | Os01g0127000 | OsLPR3 | Detail |
| CX1g000607 | 1:1,187,222-1,189,567 | - | C1H1g19697 | C2H1g15386 | LOC_Os01g03630 | Os01g0127000 | OsLPR3 | Detail |
| CX1g000136 | 1:1,193,385-1,196,162 | - | C1H1g14698 | C2H1g06554 | LOC_Os01g03640 | Os01g0127200 | OsLPR5, OsSTA2 | Detail |
| CX1g005762 | 1:1,201,615-1,205,416 | - | C1H1g30854 | C2H1g21958 | LOC_Os01g03650 | Os01g0127300 | - | Detail |
| CX1g003465 | 1:1,205,216-1,208,037 | + | C1H1g00412 | C2H1g24576 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| CX1g002042 | 1:1,209,502-1,210,188 | + | C1H1g25838 | C2H1g17865 | LOC_Os01g03720 | Os01g0127450 | - | Detail |
| CX1g005179 | 1:1,210,718-1,211,814 | + | C1H1g17663 | C2H1g02319 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| CX1g002886 | 1:1,212,718-1,213,284 | + | C1H1g11231 | C2H1g19770 | LOC_Os01g03680 | Os01g0127600 | - | Detail |
| CX1g006285 | 1:1,215,545-1,218,614 | + | C1H1g05668 | C2H1g03781 | LOC_Os01g03690 | Os01g0115500 | - | Detail |
| CX1g000778 | 1:1,222,670-1,223,032 | - | - | - | - | - | - | Detail |
| CX1g004218 | 1:1,226,221-1,231,285 | + | C1H1g08835 | C2H1g13836 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| CX1g002896 | 1:1,241,591-1,242,821 | - | C1H1g25654 | C2H1g25959 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| CX1g004405 | 1:1,254,914-1,256,433 | - | C1H1g31764 | C2H1g01385 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| CX1g004550 | 1:1,257,421-1,259,962 | + | C1H1g04042 | C2H1g18960 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| CX1g002239 | 1:1,260,568-1,262,777 | - | C1H1g30874 | C2H1g15883 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| CX1g006333 | 1:1,262,999-1,267,553 | - | C1H1g07436 | C2H1g19347 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| CX1g003593 | 1:1,272,777-1,273,109 | - | - | - | LOC_Os01g03810 | Os01g0128700 | - | Detail |
| CX1g003056 | 1:1,273,740-1,280,290 | + | C1H1g20521 | C2H1g18545 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| CX1g000911 | 1:1,287,622-1,287,804 | + | - | - | - | Os04g0162701 | - | Detail |
| CX1g002103 | 1:1,293,173-1,294,579 | + | C1H1g27481 | C2H1g10390 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |