| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g00812 | 5:15,438,829-15,442,874 | + | C1H5g22192 | CX5g040874 | LOC_Os05g31680 | Os05g0381500 | - | Detail |
| C2H5g24506 | 5:15,472,095-15,472,628 | - | - | - | - | - | - | Detail |
| C2H5g04833 | 5:15,485,983-15,489,606 | + | C1H5g25084 | CX5g040022 | LOC_Os05g31720 | Os05g0382000 | - | Detail |
| C2H5g08328 | 5:15,493,949-15,497,950 | - | C1H5g14307 | CX5g037534 | LOC_Os05g31730 | Os05g0382200 | - | Detail |
| C2H5g19685 | 5:15,512,813-15,514,475 | - | C1H5g01406 | CX5g040387 | LOC_Os05g31750 | Os05g0382600 | - | Detail |
| C2H5g11708 | 5:15,518,256-15,520,181 | + | C1H5g16657 | CX5g039703 | LOC_Os05g31760 | Os05g0382900 | - | Detail |
| C2H5g06666 | 5:15,520,592-15,523,170 | - | C1H5g24084 | CX5g037302 | LOC_Os05g31770 | Os05g0383000 | - | Detail |
| C2H5g25307 | 5:15,525,153-15,529,489 | - | C1H5g11233 | CX5g037753 | LOC_Os05g31780 | Os05g0383100 | - | Detail |
| C2H5g14308 | 5:15,538,760-15,540,058 | - | - | - | - | - | - | Detail |
| C2H5g16202 | 5:15,574,736-15,576,724 | - | C1H5g19817 | CX5g036890 | LOC_Os05g31910 | Os05g0384600 | - | Detail |
| C2H5g16221 | 5:15,581,921-15,590,244 | - | C1H5g14350 | CX5g039660 | LOC_Os05g31920 | Os05g0384800 | - | Detail |
| C2H5g19197 | 5:15,627,469-15,627,897 | - | C1H5g06780 | - | - | - | - | Detail |
| C2H5g28340 | 5:15,627,496-15,632,018 | + | C1H5g04647 | CX5g037630 | LOC_Os05g32060 | Os05g0386000 | - | Detail |
| C2H5g02326 | 5:15,640,943-15,642,543 | - | C1H5g24020 | CX5g038141 | LOC_Os05g32070 | Os05g0386201 | - | Detail |
| C2H5g13761 | 5:15,664,361-15,665,056 | + | C1H5g12810 | CX5g038936 | LOC_Os05g32100 | Os05g0386400 | - | Detail |
| C2H5g24568 | 5:15,672,836-15,676,421 | - | C1H5g22229 | CX5g036682 | LOC_Os05g32110 | Os05g0386800 | - | Detail |
| C2H5g06485 | 5:15,681,898-15,684,506 | + | C1H5g03117 | CX5g040992 | LOC_Os05g32120 | Os05g0386900 | - | Detail |
| C2H5g23057 | 5:15,685,598-15,688,002 | + | C1H5g30528 | CX5g038566 | LOC_Os05g32130 | - | - | Detail |
| C2H5g24262 | 5:15,692,006-15,696,365 | + | C1H5g26112 | CX5g040130 | LOC_Os05g32140 | Os05g0387200 | - | Detail |
| C2H5g10291 | 5:15,698,097-15,698,435 | - | C1H5g08301 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030588 | 3:14,223,635-14,228,298 | - | - | C2H2g02575 | - | - | - | Detail |
| CX3g027706 | 3:14,275,134-14,279,722 | - | C1H3g26998 | C2H3g03469 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| CX3g026110 | 3:14,287,232-14,288,749 | + | C1H3g17152 | C2H3g01147 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| CX3g027508 | 3:14,304,354-14,304,503 | + | - | - | - | - | - | Detail |
| CX3g028968 | 3:14,344,669-14,344,821 | + | - | - | - | - | - | Detail |
| CX3g031126 | 3:14,345,332-14,346,150 | - | - | - | - | - | - | Detail |
| CX3g026596 | 3:14,346,342-14,346,575 | + | C1H6g31651 | C2H6g01158 | LOC_Os03g27750 | - | - | Detail |
| CX3g027952 | 3:14,349,067-14,352,631 | - | C1H3g03234 | C2H3g26978 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| CX3g030447 | 3:14,366,825-14,369,591 | - | C1H3g11733 | C2H3g09617 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| CX3g028476 | 3:14,374,691-14,377,867 | + | C1H3g19183 | C2H3g01443 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| CX3g026022 | 3:14,379,004-14,379,285 | - | - | - | LOC_Os03g27790 | Os03g0395200 | - | Detail |
| CX3g030371 | 3:14,381,867-14,384,422 | - | C1H3g08236 | C2H3g18166 | LOC_Os03g27800 | Os03g0395300 | - | Detail |
| CX3g026141 | 3:14,393,740-14,403,019 | + | C1H3g01799 | C2H3g07826 | LOC_Os03g27820 | Os03g0395600 | - | Detail |
| CX3g026363 | 3:14,423,787-14,429,794 | + | C1H3g28884 | C2H3g08215 | LOC_Os03g27840 | Os03g0395900 | - | Detail |
| CX3g027578 | 3:14,437,488-14,438,663 | + | C1H3g01530 | C2H3g19865 | LOC_Os03g27850 | Os03g0396000 | - | Detail |
| CX3g027489 | 3:14,444,731-14,446,980 | - | C1H3g13556 | C2H3g17418 | LOC_Os03g27880 | Os03g0396200 | - | Detail |
| CX3g030978 | 3:14,452,381-14,453,077 | - | C1H3g24344 | C2H3g02671 | LOC_Os03g27900 | Os03g0396500 | - | Detail |
| CX3g028903 | 3:14,466,555-14,472,459 | + | C1H3g22022 | C2H3g12892 | LOC_Os03g27930 | Os03g0396900 | - | Detail |
| CX3g026417 | 3:14,475,307-14,475,885 | + | C1H3g00858 | C2H3g11199 | - | - | - | Detail |
| CX3g031110 | 3:14,476,661-14,487,887 | + | C1H3g12738 | C2H3g14980 | LOC_Os03g27950 | Os03g0397300 | - | Detail |