| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g02736 | 6:2,529,469-2,534,469 | + | C1H6g04308 | CX6g041513 | LOC_Os06g06770 | Os06g0163200 | - | Detail |
| C2H6g03282 | 6:2,538,769-2,542,140 | + | C1H6g18381 | CX6g045832 | LOC_Os06g06780 | Os06g0163300 | - | Detail |
| C2H6g27321 | 6:2,542,534-2,547,151 | + | C1H6g17692 | CX6g042498 | LOC_Os06g06790 | Os06g0163400 | - | Detail |
| C2H6g11880 | 6:2,548,268-2,556,728 | + | C1H6g04294 | CX6g041757 | LOC_Os06g06810 | Os06g0163500 | - | Detail |
| C2H6g17539 | 6:2,557,302-2,561,516 | - | C1H6g11950 | CX6g042556 | LOC_Os06g06820 | Os06g0163600 | - | Detail |
| C2H6g07092 | 6:2,581,967-2,582,615 | + | C1H6g04897 | - | - | - | - | Detail |
| C2H6g28033 | 6:2,586,702-2,591,795 | - | C1H6g25116 | CX6g045281 | LOC_Os06g06860 | Os06g0163900 | - | Detail |
| C2H6g16325 | 6:2,598,557-2,602,404 | - | C1H6g07484 | CX6g041288 | LOC_Os06g06860 | Os06g0163900 | - | Detail |
| C2H6g27105 | 6:2,610,939-2,614,665 | - | C1H6g17754 | CX6g045281 | LOC_Os06g06850 | Os06g0163701 | - | Detail |
| C2H6g19300 | 6:2,619,040-2,628,986 | - | C1H6g15154 | CX6g044665 | LOC_Os06g06870 | Os06g0164000 | - | Detail |
| C2H6g13584 | 6:2,632,512-2,635,386 | - | C1H6g16643 | CX6g043425 | LOC_Os06g06880 | Os06g0164100 | - | Detail |
| C2H6g17066 | 6:2,638,928-2,641,308 | + | C1H6g22631 | CX6g043164 | LOC_Os06g06900 | Os06g0164400 | SD6 | Detail |
| C2H6g15240 | 6:2,643,584-2,644,696 | + | C1H6g27522 | CX6g043763 | LOC_Os06g06910 | Os06g0164500 | - | Detail |
| C2H6g05978 | 6:2,645,914-2,646,259 | + | C1H6g27522 | - | - | Os06g0164600 | - | Detail |
| C2H6g27147 | 6:2,651,143-2,651,615 | + | C1H6g04079 | - | - | Os06g0164800 | - | Detail |
| C2H6g26148 | 6:2,652,337-2,654,796 | - | C1H6g26949 | CX6g043662 | LOC_Os06g06930 | Os06g0164900 | SDRLK-66 | Detail |
| C2H6g20187 | 6:2,660,893-2,662,265 | - | C1H6g21095 | CX6g041199 | LOC_Os06g06960 | Os06g0164900 | SDRLK-66 | Detail |
| C2H6g10099 | 6:2,669,320-2,671,734 | - | C1H6g20561 | CX6g042251 | LOC_Os06g06960 | Os06g0165500 | SDRLK-37 | Detail |
| C2H6g02227 | 6:2,675,466-2,676,714 | + | C1H6g08551 | CX6g042723 | - | Os06g0165800 | - | Detail |
| C2H6g29462 | 6:2,679,429-2,682,798 | - | C1H6g29634 | CX6g041346 | LOC_Os06g07000 | Os06g0166000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030588 | 3:14,223,635-14,228,298 | - | - | C2H2g02575 | - | - | - | Detail |
| CX3g027706 | 3:14,275,134-14,279,722 | - | C1H3g26998 | C2H3g03469 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| CX3g026110 | 3:14,287,232-14,288,749 | + | C1H3g17152 | C2H3g01147 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| CX3g027508 | 3:14,304,354-14,304,503 | + | - | - | - | - | - | Detail |
| CX3g028968 | 3:14,344,669-14,344,821 | + | - | - | - | - | - | Detail |
| CX3g031126 | 3:14,345,332-14,346,150 | - | - | - | - | - | - | Detail |
| CX3g026596 | 3:14,346,342-14,346,575 | + | C1H6g31651 | C2H6g01158 | LOC_Os03g27750 | - | - | Detail |
| CX3g027952 | 3:14,349,067-14,352,631 | - | C1H3g03234 | C2H3g26978 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| CX3g030447 | 3:14,366,825-14,369,591 | - | C1H3g11733 | C2H3g09617 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| CX3g028476 | 3:14,374,691-14,377,867 | + | C1H3g19183 | C2H3g01443 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| CX3g026022 | 3:14,379,004-14,379,285 | - | - | - | LOC_Os03g27790 | Os03g0395200 | - | Detail |
| CX3g030371 | 3:14,381,867-14,384,422 | - | C1H3g08236 | C2H3g18166 | LOC_Os03g27800 | Os03g0395300 | - | Detail |
| CX3g026141 | 3:14,393,740-14,403,019 | + | C1H3g01799 | C2H3g07826 | LOC_Os03g27820 | Os03g0395600 | - | Detail |
| CX3g026363 | 3:14,423,787-14,429,794 | + | C1H3g28884 | C2H3g08215 | LOC_Os03g27840 | Os03g0395900 | - | Detail |
| CX3g027578 | 3:14,437,488-14,438,663 | + | C1H3g01530 | C2H3g19865 | LOC_Os03g27850 | Os03g0396000 | - | Detail |
| CX3g027489 | 3:14,444,731-14,446,980 | - | C1H3g13556 | C2H3g17418 | LOC_Os03g27880 | Os03g0396200 | - | Detail |
| CX3g030978 | 3:14,452,381-14,453,077 | - | C1H3g24344 | C2H3g02671 | LOC_Os03g27900 | Os03g0396500 | - | Detail |
| CX3g028903 | 3:14,466,555-14,472,459 | + | C1H3g22022 | C2H3g12892 | LOC_Os03g27930 | Os03g0396900 | - | Detail |
| CX3g026417 | 3:14,475,307-14,475,885 | + | C1H3g00858 | C2H3g11199 | - | - | - | Detail |
| CX3g031110 | 3:14,476,661-14,487,887 | + | C1H3g12738 | C2H3g14980 | LOC_Os03g27950 | Os03g0397300 | - | Detail |