| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g03646 | 4:23,057,717-23,061,648 | - | C2H4g16563 | CX4g035100 | LOC_Os04g44800 | Os04g0530300 | - | Detail |
| C1H4g09494 | 4:23,061,983-23,064,807 | + | C2H4g24018 | CX4g034443 | LOC_Os04g44810 | Os04g0530400 | - | Detail |
| C1H4g17930 | 4:23,076,372-23,078,451 | - | C2H4g21127 | CX4g031701 | LOC_Os04g44830 | Os04g0530600 | - | Detail |
| C1H4g14381 | 4:23,079,078-23,082,752 | - | C2H4g29146 | CX4g032283 | LOC_Os04g44840 | Os04g0530700 | - | Detail |
| C1H4g00210 | 4:23,096,009-23,097,959 | + | C2H4g06600 | CX4g035036 | LOC_Os04g44870 | Os04g0531100 | OsERG3, RPP16 | Detail |
| C1H4g10707 | 4:23,103,344-23,107,951 | + | C2H4g12834 | CX4g035695 | LOC_Os04g44890 | Os04g0531300 | - | Detail |
| C1H4g31207 | 4:23,114,374-23,122,836 | + | C2H4g22643 | CX4g033866 | LOC_Os04g44920 | Os04g0531700 | - | Detail |
| C1H4g07887 | 4:23,131,118-23,131,333 | - | C2H4g10841 | CX4g032989 | LOC_Os04g44950 | Os04g0531900 | - | Detail |
| C1H4g04977 | 4:23,131,373-23,132,499 | - | C2H4g10841 | CX4g032989 | LOC_Os04g44950 | Os04g0531900 | - | Detail |
| C1H4g27067 | 4:23,136,073-23,144,302 | + | C2H4g27624 | CX4g035927 | LOC_Os04g41690 | - | - | Detail |
| C1H4g29288 | 4:23,137,197-23,146,329 | - | C2H4g11471 | CX4g035062 | LOC_Os04g44980 | Os04g0532100 | - | Detail |
| C1H4g29914 | 4:23,150,436-23,151,839 | + | C2H4g28812 | CX4g036373 | LOC_Os04g45000 | Os04g0532400 | - | Detail |
| C1H4g23933 | 4:23,154,172-23,155,618 | - | C2H4g21448 | CX4g034071 | LOC_Os04g45010 | Os04g0532500 | - | Detail |
| C1H4g31469 | 4:23,174,648-23,177,040 | + | C2H4g29998 | CX4g033056 | LOC_Os04g45020 | Os04g0532800 | Os2R_MYB47 | Detail |
| C1H4g04742 | 4:23,183,455-23,189,884 | + | C2H4g02808 | CX4g036390 | LOC_Os04g45040 | Os04g0533000 | - | Detail |
| C1H4g24649 | 4:23,195,955-23,196,368 | + | C2H4g29228 | CX4g033299 | LOC_Os04g45060 | Os04g0533200 | Os2R_MYB48 | Detail |
| C1H4g29346 | 4:23,196,734-23,197,363 | + | C2H4g29228 | CX4g033056 | LOC_Os04g45060 | Os04g0533200 | Os2R_MYB48 | Detail |
| C1H4g12380 | 4:23,201,252-23,204,984 | - | C2H4g10200 | CX4g032901 | LOC_Os04g45070 | Os04g0533300 | - | Detail |
| C1H4g03742 | 4:23,213,202-23,215,086 | - | C2H4g06912 | CX4g031506 | LOC_Os04g45090 | Os04g0533500 | - | Detail |
| C1H4g04293 | 4:23,218,183-23,219,537 | + | C2H4g13325 | CX4g032173 | LOC_Os04g45110 | Os04g0533700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030588 | 3:14,223,635-14,228,298 | - | - | C2H2g02575 | - | - | - | Detail |
| CX3g027706 | 3:14,275,134-14,279,722 | - | C1H3g26998 | C2H3g03469 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| CX3g026110 | 3:14,287,232-14,288,749 | + | C1H3g17152 | C2H3g01147 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| CX3g027508 | 3:14,304,354-14,304,503 | + | - | - | - | - | - | Detail |
| CX3g028968 | 3:14,344,669-14,344,821 | + | - | - | - | - | - | Detail |
| CX3g031126 | 3:14,345,332-14,346,150 | - | - | - | - | - | - | Detail |
| CX3g026596 | 3:14,346,342-14,346,575 | + | C1H6g31651 | C2H6g01158 | LOC_Os03g27750 | - | - | Detail |
| CX3g027952 | 3:14,349,067-14,352,631 | - | C1H3g03234 | C2H3g26978 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| CX3g030447 | 3:14,366,825-14,369,591 | - | C1H3g11733 | C2H3g09617 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| CX3g028476 | 3:14,374,691-14,377,867 | + | C1H3g19183 | C2H3g01443 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| CX3g026022 | 3:14,379,004-14,379,285 | - | - | - | LOC_Os03g27790 | Os03g0395200 | - | Detail |
| CX3g030371 | 3:14,381,867-14,384,422 | - | C1H3g08236 | C2H3g18166 | LOC_Os03g27800 | Os03g0395300 | - | Detail |
| CX3g026141 | 3:14,393,740-14,403,019 | + | C1H3g01799 | C2H3g07826 | LOC_Os03g27820 | Os03g0395600 | - | Detail |
| CX3g026363 | 3:14,423,787-14,429,794 | + | C1H3g28884 | C2H3g08215 | LOC_Os03g27840 | Os03g0395900 | - | Detail |
| CX3g027578 | 3:14,437,488-14,438,663 | + | C1H3g01530 | C2H3g19865 | LOC_Os03g27850 | Os03g0396000 | - | Detail |
| CX3g027489 | 3:14,444,731-14,446,980 | - | C1H3g13556 | C2H3g17418 | LOC_Os03g27880 | Os03g0396200 | - | Detail |
| CX3g030978 | 3:14,452,381-14,453,077 | - | C1H3g24344 | C2H3g02671 | LOC_Os03g27900 | Os03g0396500 | - | Detail |
| CX3g028903 | 3:14,466,555-14,472,459 | + | C1H3g22022 | C2H3g12892 | LOC_Os03g27930 | Os03g0396900 | - | Detail |
| CX3g026417 | 3:14,475,307-14,475,885 | + | C1H3g00858 | C2H3g11199 | - | - | - | Detail |
| CX3g031110 | 3:14,476,661-14,487,887 | + | C1H3g12738 | C2H3g14980 | LOC_Os03g27950 | Os03g0397300 | - | Detail |