| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01227 | 3:731,868-732,278 | + | C2H3g26464 | CX3g030673 | LOC_Os03g02400 | Os03g0115000 | - | Detail |
| C1H3g17339 | 3:732,922-738,002 | - | C2H3g20722 | CX3g029693 | LOC_Os03g02410 | Os03g0115100 | - | Detail |
| C1H3g13483 | 3:739,252-740,779 | - | C2H3g13923 | CX3g027454 | LOC_Os03g02420 | Os03g0115200 | - | Detail |
| C1H3g13601 | 3:742,431-743,993 | - | C2H3g21090 | CX3g030326 | LOC_Os03g02430 | Os03g0115300 | - | Detail |
| C1H3g19300 | 3:752,479-757,295 | + | C2H3g04722 | CX3g026894 | LOC_Os03g02440 | Os03g0115400 | - | Detail |
| C1H3g29650 | 3:760,128-762,788 | + | C2H3g02456 | - | LOC_Os03g02450 | Os03g0115500 | - | Detail |
| C1H3g23217 | 3:766,355-768,125 | - | C2H3g18631 | CX3g027733 | LOC_Os03g02460 | Os03g0115700 | - | Detail |
| C1H3g20096 | 3:780,544-784,447 | + | C2H3g08520 | CX3g027934 | LOC_Os03g02480 | Os03g0116000 | - | Detail |
| C1H3g02353 | 3:791,975-797,778 | + | C2H3g18720 | CX3g030191 | LOC_Os03g02514 | Os03g0116300 | - | Detail |
| C1H3g28919 | 3:801,024-803,471 | + | C2H3g12526 | CX3g025863 | LOC_Os03g02530 | Os03g0116400 | - | Detail |
| C1H3g00538 | 3:803,887-807,944 | - | C2H3g29694 | CX3g025869 | LOC_Os03g02540 | Os03g0116500 | OsCSN1 | Detail |
| C1H3g24771 | 3:809,821-810,093 | + | - | CX3g028647 | LOC_Os03g02544 | Os03g0116600 | - | Detail |
| C1H3g22420 | 3:813,623-815,144 | + | C2H3g29079 | CX3g029631 | LOC_Os03g02550 | Os03g0116700 | - | Detail |
| C1H3g28877 | 3:816,407-819,615 | + | C2H3g17551 | CX3g027406 | LOC_Os03g02560 | Os03g0116800 | - | Detail |
| C1H3g19707 | 3:828,732-831,353 | - | C2H3g02337 | CX3g025851 | LOC_Os03g02690 | Os03g0118600 | - | Detail |
| C1H3g30074 | 3:831,363-835,686 | + | C2H3g25975 | CX3g030823 | LOC_Os03g02580 | Os03g0116900 | - | Detail |
| C1H3g17178 | 3:836,306-837,634 | - | C2H3g27471 | CX3g027445 | LOC_Os03g02590 | Os03g0117100 | - | Detail |
| C1H3g12831 | 3:840,321-842,073 | + | C2H3g13914 | CX3g029190 | LOC_Os03g02600 | Os03g0117200 | - | Detail |
| C1H3g08482 | 3:843,814-844,758 | + | C2H3g10644 | CX3g030477 | LOC_Os03g02610 | Os03g0117300 | - | Detail |
| C1H3g14052 | 3:845,755-849,523 | + | C2H3g09711 | CX3g025697 | LOC_Os03g02640 | Os03g0117800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030588 | 3:14,223,635-14,228,298 | - | - | C2H2g02575 | - | - | - | Detail |
| CX3g027706 | 3:14,275,134-14,279,722 | - | C1H3g26998 | C2H3g03469 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| CX3g026110 | 3:14,287,232-14,288,749 | + | C1H3g17152 | C2H3g01147 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| CX3g027508 | 3:14,304,354-14,304,503 | + | - | - | - | - | - | Detail |
| CX3g028968 | 3:14,344,669-14,344,821 | + | - | - | - | - | - | Detail |
| CX3g031126 | 3:14,345,332-14,346,150 | - | - | - | - | - | - | Detail |
| CX3g026596 | 3:14,346,342-14,346,575 | + | C1H6g31651 | C2H6g01158 | LOC_Os03g27750 | - | - | Detail |
| CX3g027952 | 3:14,349,067-14,352,631 | - | C1H3g03234 | C2H3g26978 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| CX3g030447 | 3:14,366,825-14,369,591 | - | C1H3g11733 | C2H3g09617 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| CX3g028476 | 3:14,374,691-14,377,867 | + | C1H3g19183 | C2H3g01443 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| CX3g026022 | 3:14,379,004-14,379,285 | - | - | - | LOC_Os03g27790 | Os03g0395200 | - | Detail |
| CX3g030371 | 3:14,381,867-14,384,422 | - | C1H3g08236 | C2H3g18166 | LOC_Os03g27800 | Os03g0395300 | - | Detail |
| CX3g026141 | 3:14,393,740-14,403,019 | + | C1H3g01799 | C2H3g07826 | LOC_Os03g27820 | Os03g0395600 | - | Detail |
| CX3g026363 | 3:14,423,787-14,429,794 | + | C1H3g28884 | C2H3g08215 | LOC_Os03g27840 | Os03g0395900 | - | Detail |
| CX3g027578 | 3:14,437,488-14,438,663 | + | C1H3g01530 | C2H3g19865 | LOC_Os03g27850 | Os03g0396000 | - | Detail |
| CX3g027489 | 3:14,444,731-14,446,980 | - | C1H3g13556 | C2H3g17418 | LOC_Os03g27880 | Os03g0396200 | - | Detail |
| CX3g030978 | 3:14,452,381-14,453,077 | - | C1H3g24344 | C2H3g02671 | LOC_Os03g27900 | Os03g0396500 | - | Detail |
| CX3g028903 | 3:14,466,555-14,472,459 | + | C1H3g22022 | C2H3g12892 | LOC_Os03g27930 | Os03g0396900 | - | Detail |
| CX3g026417 | 3:14,475,307-14,475,885 | + | C1H3g00858 | C2H3g11199 | - | - | - | Detail |
| CX3g031110 | 3:14,476,661-14,487,887 | + | C1H3g12738 | C2H3g14980 | LOC_Os03g27950 | Os03g0397300 | - | Detail |