| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g14689 | 4:17,498,476-17,499,604 | + | C1H4g00507 | CX4g034163 | LOC_Os04g33870 | Os04g0415100 | - | Detail |
| C2H4g24946 | 4:17,505,394-17,507,226 | + | C1H4g11437 | CX4g033864 | LOC_Os04g33880 | Os04g0415200 | - | Detail |
| C2H4g19875 | 4:17,512,048-17,512,605 | + | - | - | LOC_Os04g33900 | Os04g0415600 | - | Detail |
| C2H4g19861 | 4:17,518,322-17,518,997 | + | C1H4g17536 | CX4g032762 | LOC_Os04g33920 | Os04g0415800 | - | Detail |
| C2H4g09747 | 4:17,522,153-17,523,007 | + | C1H4g29189 | CX4g034185 | LOC_Os04g33930 | Os04g0415800 | - | Detail |
| C2H4g16694 | 4:17,523,874-17,524,605 | + | C1H4g07179 | CX4g035734 | LOC_Os04g33940 | Os04g0416000 | - | Detail |
| C2H4g00223 | 4:17,524,897-17,530,291 | - | C1H4g19958 | CX4g035193 | LOC_Os04g33950 | Os04g0416100 | OsE2Fa-3 | Detail |
| C2H4g02278 | 4:17,536,101-17,537,996 | + | C1H4g19221 | CX4g036299 | LOC_Os04g33970 | Os04g0416400 | - | Detail |
| C2H4g08743 | 4:17,539,031-17,539,603 | + | C1H4g02442 | CX4g036299 | LOC_Os04g33970 | - | - | Detail |
| C2H4g02387 | 4:17,544,023-17,547,683 | + | C1H4g24309 | CX4g035969 | LOC_Os04g33980 | Os04g0416500 | - | Detail |
| C2H4g26517 | 4:17,554,892-17,556,067 | - | C1H4g25538 | CX4g032955 | LOC_Os04g33990 | Os04g0416700 | - | Detail |
| C2H4g30043 | 4:17,560,725-17,561,271 | + | C1H4g18396 | CX4g034560 | - | - | - | Detail |
| C2H4g21787 | 4:17,563,491-17,570,569 | + | C1H4g22240 | CX4g036482 | LOC_Os04g34000 | Os04g0416900 | - | Detail |
| C2H4g11943 | 4:17,569,516-17,572,602 | - | C1H4g22652 | CX4g032874 | LOC_Os04g34010 | Os04g0417000 | - | Detail |
| C2H4g28743 | 4:17,619,939-17,620,557 | + | - | - | - | - | - | Detail |
| C2H4g20144 | 4:17,628,933-17,633,909 | - | C1H4g23500 | CX4g031544 | LOC_Os04g34080 | Os04g0417800 | - | Detail |
| C2H4g01329 | 4:17,642,352-17,645,445 | + | C1H4g21415 | CX4g032049 | LOC_Os04g34100 | Os04g0418000 | - | Detail |
| C2H4g00094 | 4:17,678,396-17,679,615 | - | C1H4g23677 | CX4g033097 | LOC_Os12g23430 | - | - | Detail |
| C2H4g14390 | 4:17,680,154-17,681,298 | - | C1H4g22739 | CX4g033097 | LOC_Os12g23400 | - | - | Detail |
| C2H4g10939 | 4:17,686,820-17,687,191 | + | C1H4g13632 | CX4g032730 | LOC_Os04g34150 | Os04g0418600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025732 | 3:14,001,539-14,005,584 | + | C1H3g20114 | C2H3g24243 | LOC_Os03g27230 | Os03g0389700 | OsDAHPS1, DAHPS1 | Detail |
| CX3g028319 | 3:14,010,964-14,018,063 | + | C1H3g30971 | C2H3g12972 | LOC_Os03g27250 | Os03g0389900 | - | Detail |
| CX3g027960 | 3:14,019,414-14,021,460 | - | C1H3g19742 | C2H3g06738 | LOC_Os03g27260 | Os03g0390000 | - | Detail |
| CX3g031288 | 3:14,025,481-14,029,298 | - | C1H3g17252 | C2H3g21967 | LOC_Os03g27280 | Os03g0390200 | - | Detail |
| CX3g029813 | 3:14,048,617-14,050,327 | + | C1H3g08377 | C2H3g10154 | LOC_Os03g27290 | Os03g0390400 | - | Detail |
| CX3g025879 | 3:14,054,529-14,055,211 | + | C1H3g03476 | C2H3g16150 | LOC_Os03g27310 | Os03g0390600 | - | Detail |
| CX3g025932 | 3:14,056,208-14,059,192 | + | C1H3g30084 | C2H3g25165 | LOC_Os03g27320 | Os03g0390700 | OsTTL | Detail |
| CX3g027950 | 3:14,061,901-14,064,846 | + | C1H3g29350 | C2H3g02856 | LOC_Os03g27350 | Os03g0391000 | - | Detail |
| CX3g026532 | 3:14,068,825-14,070,048 | + | C1H3g09929 | C2H3g17457 | LOC_Os03g27360 | Os03g0391100 | - | Detail |
| CX3g028456 | 3:14,075,627-14,080,400 | + | C1H3g16806 | C2H3g06527 | LOC_Os03g27370 | Os03g0391400 | OsPLDα6, OsPLDalpha6 | Detail |
| CX3g030612 | 3:14,090,180-14,090,341 | + | - | - | - | - | - | Detail |
| CX3g028215 | 3:14,092,555-14,093,487 | - | C1H3g30949 | C2H3g10546 | LOC_Os03g27390 | Os03g0391700 | OsbHLH138 | Detail |
| CX3g028568 | 3:14,106,024-14,106,304 | - | - | - | - | - | - | Detail |
| CX3g030816 | 3:14,130,251-14,132,229 | - | C1H3g13034 | C2H3g23808 | LOC_Os03g27420 | Os03g0392000 | - | Detail |
| CX3g030757 | 3:14,141,915-14,146,091 | + | C1H3g16459 | C2H3g21955 | LOC_Os03g27450 | Os03g0392300 | - | Detail |
| CX3g027329 | 3:14,149,381-14,150,598 | - | C1H7g19542 | C2H7g30397 | LOC_Os03g27460 | Os03g0392400 | - | Detail |
| CX3g027984 | 3:14,160,136-14,163,671 | - | C1H3g12299 | C2H3g23340 | LOC_Os03g27550 | Os03g0392600 | - | Detail |
| CX3g029492 | 3:14,162,104-14,162,259 | + | - | - | - | Os03g0392833 | - | Detail |
| CX3g027782 | 3:14,178,322-14,190,335 | - | C1H3g05327 | C2H3g09365 | LOC_Os03g27510 | Os03g0393100 | - | Detail |
| CX3g026827 | 3:14,211,288-14,223,114 | - | C1H3g28596 | C2H3g00521 | LOC_Os03g27550 | Os03g0393300 | - | Detail |