| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g11184 | 1:4,372,099-4,372,701 | - | C2H1g19735 | CX1g005144 | LOC_Os01g09700 | Os01g0192900 | OS-ACS5 | Detail |
| C1H1g27970 | 1:4,399,602-4,400,848 | + | C2H1g05843 | CX1g005975 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| C1H1g11468 | 1:4,401,063-4,403,258 | - | C2H1g21862 | CX1g003550 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| C1H1g10688 | 1:4,404,922-4,408,426 | - | C2H1g17174 | CX1g000614 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| C1H1g13152 | 1:4,410,584-4,419,547 | + | C2H1g04548 | CX1g006629 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| C1H1g06151 | 1:4,419,821-4,423,287 | - | C2H1g08327 | CX1g002400 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| C1H1g16281 | 1:4,434,056-4,436,223 | - | C2H1g05163 | CX1g002653 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| C1H1g29130 | 1:4,441,244-4,445,838 | - | C2H1g20037 | CX1g000713 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| C1H1g00947 | 1:4,468,220-4,470,798 | + | C2H1g26832 | CX1g005498 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| C1H1g03034 | 1:4,478,548-4,485,674 | - | C2H1g03615 | CX1g000509 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| C1H1g10561 | 1:4,496,706-4,497,182 | - | C2H1g17887 | CX1g001794 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| C1H1g31641 | 1:4,501,253-4,502,116 | - | C2H1g30117 | CX1g003898 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| C1H1g28666 | 1:4,508,296-4,510,691 | - | C2H1g28884 | CX1g000703 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| C1H1g30631 | 1:4,512,696-4,513,298 | + | C2H1g00669 | - | - | - | - | Detail |
| C1H1g02897 | 1:4,519,094-4,520,553 | + | C2H1g25043 | CX1g006997 | LOC_Os01g09900 | Os01g0195801 | - | Detail |
| C1H1g13131 | 1:4,531,984-4,532,278 | - | C2H1g19433 | CX12g016171 | LOC_Os12g41650 | Os12g0610200 | OsPIL11, OsbHLH102 | Detail |
| C1H1g28746 | 1:4,540,072-4,545,139 | + | C2H1g29514 | CX1g006997 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| C1H1g18771 | 1:4,559,913-4,561,620 | + | C2H1g19303 | CX1g006997 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| C1H1g05499 | 1:4,579,528-4,580,958 | + | C2H1g12871 | CX1g005979 | LOC_Os01g10020 | Os01g0196600 | - | Detail |
| C1H1g14618 | 1:4,606,642-4,613,892 | + | C2H1g28373 | CX1g004524 | LOC_Os01g10040 | Os01g0197100 | D2, D2b, CYP90D2/D2, d2, dwf2, CYP90D2, D2/CYP90D2, OsD2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025732 | 3:14,001,539-14,005,584 | + | C1H3g20114 | C2H3g24243 | LOC_Os03g27230 | Os03g0389700 | OsDAHPS1, DAHPS1 | Detail |
| CX3g028319 | 3:14,010,964-14,018,063 | + | C1H3g30971 | C2H3g12972 | LOC_Os03g27250 | Os03g0389900 | - | Detail |
| CX3g027960 | 3:14,019,414-14,021,460 | - | C1H3g19742 | C2H3g06738 | LOC_Os03g27260 | Os03g0390000 | - | Detail |
| CX3g031288 | 3:14,025,481-14,029,298 | - | C1H3g17252 | C2H3g21967 | LOC_Os03g27280 | Os03g0390200 | - | Detail |
| CX3g029813 | 3:14,048,617-14,050,327 | + | C1H3g08377 | C2H3g10154 | LOC_Os03g27290 | Os03g0390400 | - | Detail |
| CX3g025879 | 3:14,054,529-14,055,211 | + | C1H3g03476 | C2H3g16150 | LOC_Os03g27310 | Os03g0390600 | - | Detail |
| CX3g025932 | 3:14,056,208-14,059,192 | + | C1H3g30084 | C2H3g25165 | LOC_Os03g27320 | Os03g0390700 | OsTTL | Detail |
| CX3g027950 | 3:14,061,901-14,064,846 | + | C1H3g29350 | C2H3g02856 | LOC_Os03g27350 | Os03g0391000 | - | Detail |
| CX3g026532 | 3:14,068,825-14,070,048 | + | C1H3g09929 | C2H3g17457 | LOC_Os03g27360 | Os03g0391100 | - | Detail |
| CX3g028456 | 3:14,075,627-14,080,400 | + | C1H3g16806 | C2H3g06527 | LOC_Os03g27370 | Os03g0391400 | OsPLDα6, OsPLDalpha6 | Detail |
| CX3g030612 | 3:14,090,180-14,090,341 | + | - | - | - | - | - | Detail |
| CX3g028215 | 3:14,092,555-14,093,487 | - | C1H3g30949 | C2H3g10546 | LOC_Os03g27390 | Os03g0391700 | OsbHLH138 | Detail |
| CX3g028568 | 3:14,106,024-14,106,304 | - | - | - | - | - | - | Detail |
| CX3g030816 | 3:14,130,251-14,132,229 | - | C1H3g13034 | C2H3g23808 | LOC_Os03g27420 | Os03g0392000 | - | Detail |
| CX3g030757 | 3:14,141,915-14,146,091 | + | C1H3g16459 | C2H3g21955 | LOC_Os03g27450 | Os03g0392300 | - | Detail |
| CX3g027329 | 3:14,149,381-14,150,598 | - | C1H7g19542 | C2H7g30397 | LOC_Os03g27460 | Os03g0392400 | - | Detail |
| CX3g027984 | 3:14,160,136-14,163,671 | - | C1H3g12299 | C2H3g23340 | LOC_Os03g27550 | Os03g0392600 | - | Detail |
| CX3g029492 | 3:14,162,104-14,162,259 | + | - | - | - | Os03g0392833 | - | Detail |
| CX3g027782 | 3:14,178,322-14,190,335 | - | C1H3g05327 | C2H3g09365 | LOC_Os03g27510 | Os03g0393100 | - | Detail |
| CX3g026827 | 3:14,211,288-14,223,114 | - | C1H3g28596 | C2H3g00521 | LOC_Os03g27550 | Os03g0393300 | - | Detail |