| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g03229 | 1:1,949,500-1,952,519 | - | C2H1g05668 | CX1g001789 | LOC_Os01g04990 | Os01g0143100 | - | Detail |
| C1H1g29677 | 1:1,955,387-1,956,097 | + | C2H1g12663 | CX1g006394 | LOC_Os01g05000 | Os01g0921800 | WCR1 | Detail |
| C1H1g02008 | 1:1,956,816-1,959,133 | - | C2H1g13945 | - | LOC_Os01g05010 | Os01g0143300 | - | Detail |
| C1H1g24343 | 1:1,960,741-1,963,203 | - | C2H1g15469 | CX1g006849 | LOC_Os01g05020 | Os01g0143400 | - | Detail |
| C1H1g07651 | 1:1,971,510-1,972,944 | - | C2H1g12519 | - | LOC_Os01g05050 | Os01g0143700 | - | Detail |
| C1H1g29985 | 1:1,973,656-1,975,598 | - | C2H1g06977 | - | LOC_Os01g05060 | Os01g0143800 | - | Detail |
| C1H1g10063 | 1:1,978,164-1,981,143 | - | C2H1g23660 | CX1g005129 | LOC_Os01g05070 | Os01g0144000 | - | Detail |
| C1H1g14146 | 1:1,982,269-1,983,997 | - | C2H1g10033 | CX1g005129 | LOC_Os01g05080 | Os01g0144100 | - | Detail |
| C1H1g07723 | 1:1,984,958-1,986,809 | + | C2H3g05697 | CX1g001193 | LOC_Os01g05090 | Os01g0144200 | - | Detail |
| C1H1g29569 | 1:1,987,462-1,988,924 | - | C2H1g12529 | CX1g000107 | LOC_Os01g05100 | Os01g0144300 | - | Detail |
| C1H1g20324 | 1:1,990,017-1,995,899 | - | C2H1g15155 | CX1g000964 | - | Os01g0144340 | - | Detail |
| C1H1g21842 | 1:1,999,608-2,001,545 | - | C2H1g26621 | CX1g006895 | LOC_Os01g05120 | Os01g0144500 | - | Detail |
| C1H1g24926 | 1:2,002,105-2,004,400 | + | C2H1g18449 | CX1g006746 | LOC_Os01g05130 | Os01g0144600 | - | Detail |
| C1H1g24429 | 1:2,005,279-2,006,527 | + | C2H1g12155 | CX1g003652 | LOC_Os01g05140 | Os01g0144700 | - | Detail |
| C1H1g29078 | 1:2,011,091-2,018,192 | + | C2H1g01902 | CX1g003888 | LOC_Os01g05170 | Os01g0145000 | - | Detail |
| C1H1g11669 | 1:2,033,416-2,033,751 | + | C2H1g27857 | CX1g003888 | LOC_Os01g05180 | Os01g0145200 | - | Detail |
| C1H1g02553 | 1:2,034,378-2,036,721 | + | - | - | LOC_Os01g05180 | Os01g0145200 | - | Detail |
| C1H1g18605 | 1:2,166,440-2,170,933 | + | C2H1g08018 | CX1g000323 | LOC_Os01g05420 | Os01g0147200 | - | Detail |
| C1H1g08705 | 1:2,172,134-2,175,521 | + | C2H1g25573 | CX1g001325 | LOC_Os01g05430 | Os01g0147300 | - | Detail |
| C1H1g07217 | 1:2,175,673-2,177,602 | - | C2H1g12465 | CX1g003030 | LOC_Os01g05440 | Os01g0147400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025732 | 3:14,001,539-14,005,584 | + | C1H3g20114 | C2H3g24243 | LOC_Os03g27230 | Os03g0389700 | OsDAHPS1, DAHPS1 | Detail |
| CX3g028319 | 3:14,010,964-14,018,063 | + | C1H3g30971 | C2H3g12972 | LOC_Os03g27250 | Os03g0389900 | - | Detail |
| CX3g027960 | 3:14,019,414-14,021,460 | - | C1H3g19742 | C2H3g06738 | LOC_Os03g27260 | Os03g0390000 | - | Detail |
| CX3g031288 | 3:14,025,481-14,029,298 | - | C1H3g17252 | C2H3g21967 | LOC_Os03g27280 | Os03g0390200 | - | Detail |
| CX3g029813 | 3:14,048,617-14,050,327 | + | C1H3g08377 | C2H3g10154 | LOC_Os03g27290 | Os03g0390400 | - | Detail |
| CX3g025879 | 3:14,054,529-14,055,211 | + | C1H3g03476 | C2H3g16150 | LOC_Os03g27310 | Os03g0390600 | - | Detail |
| CX3g025932 | 3:14,056,208-14,059,192 | + | C1H3g30084 | C2H3g25165 | LOC_Os03g27320 | Os03g0390700 | OsTTL | Detail |
| CX3g027950 | 3:14,061,901-14,064,846 | + | C1H3g29350 | C2H3g02856 | LOC_Os03g27350 | Os03g0391000 | - | Detail |
| CX3g026532 | 3:14,068,825-14,070,048 | + | C1H3g09929 | C2H3g17457 | LOC_Os03g27360 | Os03g0391100 | - | Detail |
| CX3g028456 | 3:14,075,627-14,080,400 | + | C1H3g16806 | C2H3g06527 | LOC_Os03g27370 | Os03g0391400 | OsPLDα6, OsPLDalpha6 | Detail |
| CX3g030612 | 3:14,090,180-14,090,341 | + | - | - | - | - | - | Detail |
| CX3g028215 | 3:14,092,555-14,093,487 | - | C1H3g30949 | C2H3g10546 | LOC_Os03g27390 | Os03g0391700 | OsbHLH138 | Detail |
| CX3g028568 | 3:14,106,024-14,106,304 | - | - | - | - | - | - | Detail |
| CX3g030816 | 3:14,130,251-14,132,229 | - | C1H3g13034 | C2H3g23808 | LOC_Os03g27420 | Os03g0392000 | - | Detail |
| CX3g030757 | 3:14,141,915-14,146,091 | + | C1H3g16459 | C2H3g21955 | LOC_Os03g27450 | Os03g0392300 | - | Detail |
| CX3g027329 | 3:14,149,381-14,150,598 | - | C1H7g19542 | C2H7g30397 | LOC_Os03g27460 | Os03g0392400 | - | Detail |
| CX3g027984 | 3:14,160,136-14,163,671 | - | C1H3g12299 | C2H3g23340 | LOC_Os03g27550 | Os03g0392600 | - | Detail |
| CX3g029492 | 3:14,162,104-14,162,259 | + | - | - | - | Os03g0392833 | - | Detail |
| CX3g027782 | 3:14,178,322-14,190,335 | - | C1H3g05327 | C2H3g09365 | LOC_Os03g27510 | Os03g0393100 | - | Detail |
| CX3g026827 | 3:14,211,288-14,223,114 | - | C1H3g28596 | C2H3g00521 | LOC_Os03g27550 | Os03g0393300 | - | Detail |