| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g14846 | 4:5,874,627-5,877,059 | - | C2H4g12193 | CX4g032586 | LOC_Os04g12560 | Os04g0202300 | SDRLK-LecRK2, OsLecRK2, Bph3 | Detail |
| C1H4g18742 | 4:5,893,442-5,895,408 | - | C2H4g18743 | CX4g032311 | LOC_Os04g12639 | Os04g0203400 | - | Detail |
| C1H4g19896 | 4:5,901,400-5,902,527 | + | C2H4g09802 | CX4g032887 | LOC_Os04g13090 | Os04g0206300 | - | Detail |
| C1H4g29887 | 4:5,903,313-5,904,658 | + | C2H4g21161 | - | - | - | - | Detail |
| C1H4g20976 | 4:5,907,250-5,909,143 | - | C2H4g12841 | CX4g031765 | LOC_Os04g12950 | Os04g0203600 | - | Detail |
| C1H4g28286 | 4:5,911,019-5,913,015 | - | C2H4g21936 | CX4g031919 | LOC_Os04g12960 | Os04g0206500 | - | Detail |
| C1H4g16067 | 4:5,915,586-5,917,588 | - | C2H4g02969 | CX4g035782 | LOC_Os04g12970 | Os04g0206600 | Os79 | Detail |
| C1H4g27745 | 4:5,921,715-5,924,694 | + | C2H4g16076 | CX4g035126 | LOC_Os04g12980 | Os04g0206700 | - | Detail |
| C1H4g31293 | 4:5,929,933-5,932,243 | - | C2H4g23571 | CX4g035248 | LOC_Os03g31026 | Os04g0206200 | - | Detail |
| C1H4g20788 | 4:5,935,021-5,936,148 | + | C2H4g09045 | CX4g032887 | LOC_Os04g13090 | Os04g0206300 | - | Detail |
| C1H4g09867 | 4:5,936,582-5,938,412 | + | C2H4g10642 | - | - | - | - | Detail |
| C1H4g10329 | 4:5,950,911-5,951,514 | + | C2H4g07483 | - | - | Os04g0203450 | - | Detail |
| C1H4g06112 | 4:5,952,931-5,955,048 | - | C2H4g06798 | CX4g033024 | LOC_Os04g12960 | Os04g0206500 | - | Detail |
| C1H4g00866 | 4:5,957,490-5,957,897 | - | C2H4g21810 | CX4g031758 | LOC_Os04g12720 | Os04g0206600 | Os79 | Detail |
| C1H4g18509 | 4:5,958,088-5,959,491 | - | C2H4g21810 | CX4g036312 | LOC_Os04g12970 | Os04g0206600 | Os79 | Detail |
| C1H4g07274 | 4:5,963,500-5,966,277 | + | C2H4g29510 | CX4g035126 | LOC_Os04g12980 | Os04g0206700 | - | Detail |
| C1H4g18027 | 4:5,966,918-5,968,927 | - | C2H4g16445 | CX4g035007 | LOC_Os04g12990 | - | - | Detail |
| C1H4g10301 | 4:5,974,118-5,975,205 | - | C2H4g16703 | CX4g036323 | LOC_Os01g44200 | Os04g0206200 | - | Detail |
| C1H4g17664 | 4:5,977,971-5,979,098 | + | C2H4g09045 | CX4g032887 | LOC_Os04g13090 | Os04g0206300 | - | Detail |
| C1H4g15310 | 4:5,993,827-5,995,580 | - | C2H4g02969 | CX4g031765 | LOC_Os04g12950 | Os04g0206600 | Os79 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030434 | 3:13,831,857-13,832,543 | + | C1H3g07396 | C2H3g13875 | LOC_Os03g26990 | Os03g0387300 | - | Detail |
| CX3g027120 | 3:13,842,005-13,842,505 | - | - | - | - | - | - | Detail |
| CX3g026429 | 3:13,851,010-13,851,918 | + | C1H3g11568 | - | - | - | - | Detail |
| CX3g031202 | 3:13,854,731-13,854,925 | - | - | - | - | - | - | Detail |
| CX3g025602 | 3:13,855,322-13,857,180 | + | C1H3g00426 | C2H3g15032 | LOC_Os03g27010 | Os03g0387800 | - | Detail |
| CX3g030395 | 3:13,862,003-13,867,215 | + | C1H3g07066 | C2H3g04924 | LOC_Os03g27019 | Os03g0387900 | - | Detail |
| CX3g026341 | 3:13,868,871-13,871,967 | - | C1H3g24480 | C2H3g03183 | LOC_Os03g27030 | Os03g0388000 | - | Detail |
| CX3g027742 | 3:13,873,476-13,875,192 | - | C1H3g21976 | C2H3g20630 | LOC_Os03g27040 | Os03g0388100 | - | Detail |
| CX3g031136 | 3:13,877,558-13,877,782 | - | - | - | LOC_Os03g31134 | - | - | Detail |
| CX3g028282 | 3:13,877,800-13,878,078 | + | - | - | - | Os03g0388300 | - | Detail |
| CX3g025403 | 3:13,884,898-13,885,128 | - | - | - | - | Os03g0388366 | - | Detail |
| CX3g030335 | 3:13,891,546-13,903,377 | + | C1H3g00293 | C2H3g29219 | LOC_Os03g27080 | Os03g0388500 | - | Detail |
| CX3g028996 | 3:13,909,636-13,910,982 | - | C1H3g09239 | C2H3g29965 | LOC_Os03g27090 | Os03g0388600 | Os2R_MYB38 | Detail |
| CX3g027644 | 3:13,923,495-13,924,955 | + | C1H3g24884 | C2H3g12804 | LOC_Os03g27110 | Os03g0388800 | OsSG34 | Detail |
| CX3g026189 | 3:13,926,230-13,927,635 | - | C1H3g20016 | C2H3g15221 | LOC_Os03g27120 | Os03g0388900 | OsMC1 | Detail |
| CX3g025998 | 3:13,946,511-13,947,924 | - | C1H3g10570 | C2H3g04943 | LOC_Os03g27170 | Os03g0389000 | OsMC3 | Detail |
| CX3g029196 | 3:13,951,971-13,955,865 | - | C1H3g25808 | C2H3g08633 | LOC_Os03g27190 | Os03g0389100 | OsMC8 | Detail |
| CX3g029056 | 3:13,976,819-13,977,139 | - | - | - | - | - | - | Detail |
| CX3g030618 | 3:13,978,846-13,980,569 | - | C1H3g15059 | C2H3g00005 | LOC_Os03g27210 | Os03g0389400 | OsMC2 | Detail |
| CX3g030918 | 3:13,999,884-14,000,042 | - | - | - | - | Os01g0728000 | - | Detail |