| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g16716 | 4:29,196,574-29,202,704 | + | C1H4g13098 | CX4g034339 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| C2H4g14267 | 4:29,203,420-29,205,381 | - | C1H4g29894 | CX4g033445 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| C2H4g26679 | 4:29,222,202-29,228,139 | + | C1H4g08308 | CX4g032535 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| C2H4g19453 | 4:29,231,603-29,237,104 | - | C1H4g00285 | CX4g033028 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| C2H4g17808 | 4:29,238,059-29,238,391 | - | C1H5g05278 | CX4g031937 | LOC_Os04g56760 | Os04g0663300 | OsPHF5A1 | Detail |
| C2H4g23478 | 4:29,239,673-29,239,927 | + | C1H4g10605 | CX4g034501 | - | - | - | Detail |
| C2H4g29870 | 4:29,239,978-29,243,354 | + | C1H4g18316 | CX4g032009 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| C2H4g27682 | 4:29,244,197-29,245,269 | - | C1H4g08413 | CX4g035961 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| C2H4g25028 | 4:29,253,233-29,260,212 | - | C1H4g06808 | CX4g034853 | LOC_Os04g56790 | Os04g0663700 | - | Detail |
| C2H4g24912 | 4:29,262,184-29,262,843 | + | - | CX4g036037 | LOC_Os04g56820 | - | - | Detail |
| C2H4g18884 | 4:29,265,411-29,265,767 | + | - | CX4g035877 | - | - | - | Detail |
| C2H4g26604 | 4:29,266,394-29,267,548 | - | - | - | - | - | - | Detail |
| C2H4g20102 | 4:29,268,657-29,274,641 | - | C1H4g18422 | CX4g033249 | LOC_Os04g56850 | Os04g0664400 | OsARF11, OsMP | Detail |
| C2H4g00899 | 4:29,296,008-29,297,348 | + | C1H4g27904 | CX4g034957 | LOC_Os04g56900 | Os04g0664500 | OsAHT1 | Detail |
| C2H4g19479 | 4:29,299,350-29,300,699 | - | C1H4g27904 | CX4g035701 | LOC_Os04g56910 | Os04g0664600 | OsAHT2 | Detail |
| C2H4g29529 | 4:29,307,857-29,308,045 | - | C1H4g28826 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C2H4g12473 | 4:29,308,394-29,310,189 | - | C1H4g28826 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C2H4g26922 | 4:29,310,977-29,313,340 | - | C1H4g05011 | CX4g036377 | LOC_Os04g56930 | Os04g0664900 | - | Detail |
| C2H4g09681 | 4:29,314,042-29,316,157 | + | C1H4g08334 | CX4g034395 | - | Os04g0665000 | - | Detail |
| C2H4g19734 | 4:29,317,030-29,318,991 | - | C1H4g02808 | CX4g035345 | LOC_Os04g56950 | Os04g0665200 | IAMT1, OsIAMT1, OsSABATH4 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030562 | 3:13,290,536-13,290,685 | + | - | - | - | - | - | Detail |
| CX3g029933 | 3:13,293,052-13,294,334 | + | C1H3g10607 | C2H3g19573 | LOC_Os03g25990 | Os03g0377100 | - | Detail |
| CX3g025508 | 3:13,296,972-13,312,967 | + | C1H3g00737 | C2H3g08354 | LOC_Os03g26000 | Os03g0377300 | - | Detail |
| CX3g029316 | 3:13,314,900-13,315,550 | - | C1H3g07849 | C2H3g28235 | LOC_Os03g26300 | Os03g0377600 | - | Detail |
| CX3g027228 | 3:13,316,272-13,320,012 | - | C1H3g26368 | C2H3g21234 | LOC_Os03g26044 | Os03g0377700 | OsCSLA5 | Detail |
| CX3g031025 | 3:13,321,246-13,321,617 | - | - | - | - | - | - | Detail |
| CX3g028269 | 3:13,330,240-13,331,653 | + | C1H3g10865 | C2H3g12418 | LOC_Os03g26070 | - | - | Detail |
| CX3g030093 | 3:13,332,100-13,335,633 | + | C1H3g26564 | C2H3g02469 | LOC_Os03g26080 | Os03g0378000 | OsAPY2 | Detail |
| CX3g027268 | 3:13,340,306-13,340,611 | + | - | - | LOC_Os03g29710 | - | - | Detail |
| CX3g027721 | 3:13,344,352-13,344,606 | + | C1H12g24303 | - | LOC_Os03g29710 | - | - | Detail |
| CX3g025812 | 3:13,345,941-13,352,250 | + | C1H3g21733 | C2H3g20387 | LOC_Os03g26090 | Os03g0378200 | - | Detail |
| CX3g025424 | 3:13,364,359-13,365,285 | + | C1H3g16595 | C2H3g05143 | LOC_Os03g26130 | Os03g0378500 | Os2R_MYB37 | Detail |
| CX3g024953 | 3:13,370,395-13,370,544 | - | C1H3g29791 | - | - | Os03g0748750 | - | Detail |
| CX3g025289 | 3:13,376,550-13,376,828 | - | - | - | LOC_Os03g26180 | Os03g0378832 | - | Detail |
| CX3g029246 | 3:13,382,699-13,385,412 | + | C1H3g28191 | C2H3g12084 | LOC_Os03g26200 | Os03g0379100 | - | Detail |
| CX3g024992 | 3:13,388,987-13,390,556 | + | C1H3g18201 | C2H3g20720 | LOC_Os03g26210 | Os03g0379300 | OsIRO3 | Detail |
| CX3g025371 | 3:13,391,230-13,393,263 | - | C1H3g08145 | C2H3g11313 | LOC_Os03g26220 | Os03g0379400 | - | Detail |
| CX3g029639 | 3:13,394,984-13,396,953 | + | C1H3g10024 | C2H3g22224 | LOC_Os03g26229 | Os03g0379500 | - | Detail |
| CX3g027757 | 3:13,398,831-13,399,040 | - | - | - | - | - | - | Detail |
| CX3g025942 | 3:13,400,205-13,412,367 | + | C1H3g30785 | C2H3g19366 | LOC_Os03g26250 | Os03g0379801 | - | Detail |