| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g06770 | 2:9,086,090-9,092,576 | - | C1H2g04839 | CX2g020121 | LOC_Os02g17460 | Os02g0274600 | - | Detail |
| C2H2g25557 | 2:9,094,416-9,095,481 | + | C1H2g13080 | - | - | - | - | Detail |
| C2H2g12255 | 2:9,097,550-9,100,200 | + | C1H2g13080 | CX2g019862 | LOC_Os02g17470 | Os02g0274700 | - | Detail |
| C2H2g07148 | 2:9,111,459-9,118,310 | + | C1H2g20851 | CX2g020679 | LOC_Os02g17500 | Os02g0274900 | - | Detail |
| C2H2g16988 | 2:9,123,672-9,124,927 | + | C1H2g27766 | CX2g021332 | LOC_Os02g17520 | Os02g0275100 | - | Detail |
| C2H2g25493 | 2:9,125,762-9,131,981 | - | C1H2g18414 | CX2g022654 | LOC_Os02g17534 | Os02g0275200 | - | Detail |
| C2H2g12406 | 2:9,138,853-9,140,072 | + | C1H2g18414 | CX2g022654 | LOC_Os02g17590 | - | - | Detail |
| C2H2g19414 | 2:9,144,370-9,146,293 | + | C1H2g18414 | CX2g022452 | LOC_Os02g17534 | Os02g0275200 | - | Detail |
| C2H2g11418 | 2:9,153,298-9,161,883 | - | C1H2g28570 | CX2g024094 | LOC_Os02g17620 | Os02g0276200 | - | Detail |
| C2H2g13253 | 2:9,188,438-9,191,184 | - | C1H2g09318 | CX2g019729 | LOC_Os02g17640 | Os02g0276400 | - | Detail |
| C2H2g02640 | 2:9,192,146-9,200,452 | - | C1H2g06211 | CX2g023106 | LOC_Os02g17650 | Os02g0276500 | OsVTE1 | Detail |
| C2H2g17601 | 2:9,224,532-9,226,293 | - | - | - | - | - | - | Detail |
| C2H2g21214 | 2:9,227,200-9,234,095 | - | C1H2g04949 | CX2g020993 | LOC_Os02g17680 | Os02g0276900 | - | Detail |
| C2H2g16961 | 2:9,244,502-9,246,511 | - | - | - | - | - | - | Detail |
| C2H2g07248 | 2:9,245,242-9,247,742 | + | C1H2g26261 | CX2g020060 | LOC_Os11g06800 | Os02g0231600 | - | Detail |
| C2H2g23233 | 2:9,251,488-9,256,684 | + | C1H2g06748 | CX2g023495 | LOC_Os02g17700 | Os02g0277600 | - | Detail |
| C2H2g21422 | 2:9,257,574-9,260,172 | - | C1H2g21417 | CX2g019451 | LOC_Os02g17710 | Os02g0277700 | - | Detail |
| C2H2g09294 | 2:9,267,786-9,272,819 | + | C1H2g04601 | CX2g022207 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| C2H2g18932 | 2:9,270,435-9,271,883 | - | - | - | - | Os02g0278450 | - | Detail |
| C2H2g03135 | 2:9,276,565-9,287,809 | - | C1H2g04831 | CX2g024821 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026222 | 3:13,118,365-13,118,604 | + | - | - | - | Os03g0372500 | - | Detail |
| CX3g030141 | 3:13,120,622-13,126,772 | + | C1H3g09237 | C2H3g13066 | LOC_Os03g25600 | Os03g0821300 | - | Detail |
| CX3g030815 | 3:13,129,478-13,130,081 | - | C1H3g20988 | C2H3g24461 | LOC_Os03g25610 | Os03g0372600 | - | Detail |
| CX3g025086 | 3:13,132,413-13,135,157 | + | C1H3g26671 | C2H3g09558 | LOC_Os03g25620 | Os03g0372700 | - | Detail |
| CX3g025320 | 3:13,138,104-13,138,295 | + | - | - | - | Os10g0143800 | - | Detail |
| CX3g027223 | 3:13,143,483-13,144,919 | + | - | - | LOC_Os03g25640 | Os03g0372900 | - | Detail |
| CX3g029031 | 3:13,160,235-13,163,614 | - | C1H3g02459 | C2H3g30423 | LOC_Os03g25720 | Os03g0374100 | - | Detail |
| CX3g025227 | 3:13,166,319-13,166,555 | + | - | - | - | Os03g0752000 | - | Detail |
| CX3g025872 | 3:13,168,199-13,172,662 | + | C1H3g03430 | C2H3g09363 | LOC_Os03g25750 | Os03g0374400 | - | Detail |
| CX3g031135 | 3:13,173,182-13,175,713 | - | C1H3g29992 | C2H3g02420 | LOC_Os03g25760 | Os03g0374500 | OsIQM3 | Detail |
| CX3g028239 | 3:13,186,271-13,188,698 | - | C1H3g04281 | C2H3g06785 | LOC_Os03g25770 | Os03g0374575 | OsSCL26 | Detail |
| CX3g025908 | 3:13,195,382-13,198,170 | + | C1H3g12991 | C2H3g13807 | LOC_Os03g25790 | Os03g0374600 | - | Detail |
| CX3g031122 | 3:13,218,980-13,226,694 | - | C1H3g22864 | C2H3g09283 | LOC_Os03g25840 | Os03g0375300 | - | Detail |
| CX3g025557 | 3:13,236,572-13,239,346 | - | C1H3g05274 | C2H3g17665 | LOC_Os03g25920 | Os03g0375966 | - | Detail |
| CX3g028356 | 3:13,244,441-13,247,593 | - | C1H3g13157 | C2H3g22221 | LOC_Os03g25930 | Os03g0376000 | - | Detail |
| CX3g030420 | 3:13,250,968-13,254,233 | - | C1H3g30616 | C2H3g00210 | LOC_Os03g25940 | Os03g0376100 | - | Detail |
| CX3g029886 | 3:13,261,835-13,263,566 | - | C1H3g18959 | C2H3g30664 | LOC_Os03g25960 | Os03g0376600 | OsRRM2 | Detail |
| CX3g028665 | 3:13,266,168-13,266,683 | + | - | C2H3g14769 | - | Os03g0173500 | - | Detail |
| CX3g027038 | 3:13,272,891-13,275,282 | - | C1H3g09004 | C2H3g23850 | LOC_Os03g25970 | Os03g0376800 | - | Detail |
| CX3g029788 | 3:13,277,672-13,282,171 | + | C1H3g26655 | C2H3g09355 | LOC_Os03g25980 | Os03g0376900 | - | Detail |