| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g12275 | 1:4,873,374-4,873,817 | - | C1H1g19001 | CX1g000926 | LOC_Os01g10470 | Os01g0201400 | OsRALF17 | Detail |
| C2H1g03634 | 1:4,876,589-4,877,474 | - | C1H1g16523 | CX1g002271 | LOC_Os01g10480 | Os01g0201500 | - | Detail |
| C2H1g24699 | 1:4,882,789-4,883,106 | - | C1H1g23585 | CX1g003008 | LOC_Os01g10490 | Os01g0201600 | OsGAE1 | Detail |
| C2H1g28525 | 1:4,883,213-4,883,868 | - | C1H1g14400 | CX1g003008 | LOC_Os01g10490 | Os01g0201600 | OsGAE1 | Detail |
| C2H1g13721 | 1:4,892,989-4,895,492 | - | C1H1g15606 | CX1g006928 | LOC_Os01g10504 | Os01g0886200 | - | Detail |
| C2H1g12459 | 1:4,900,735-4,900,998 | - | C1H1g15606 | CX1g006928 | LOC_Os01g10504 | Os01g0201700 | RAG, MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1 | Detail |
| C2H1g19665 | 1:4,911,955-4,917,635 | - | C1H1g13227 | CX1g003430 | LOC_Os01g10520 | Os01g0201800 | - | Detail |
| C2H1g09694 | 1:4,923,671-4,931,460 | - | C1H1g22249 | CX1g006334 | LOC_Os01g10530 | Os01g0201900 | - | Detail |
| C2H1g26674 | 1:4,964,371-4,965,624 | + | C1H1g17903 | CX1g001589 | LOC_Os01g10580 | Os01g0202500 | - | Detail |
| C2H1g25575 | 1:4,971,914-4,972,368 | + | C1H1g18982 | - | - | Os01g0202601 | - | Detail |
| C2H1g11027 | 1:4,978,392-4,981,573 | + | C1H1g22813 | CX1g006160 | LOC_Os01g10590 | Os01g0202700 | - | Detail |
| C2H1g23331 | 1:4,988,516-4,991,314 | - | C1H1g30411 | CX1g001315 | LOC_Os01g10600 | Os01g0202800 | OsNIP1;2 | Detail |
| C2H1g21358 | 1:4,992,805-4,994,882 | - | C1H1g09441 | CX1g005369 | LOC_Os01g10610 | Os01g0203000 | - | Detail |
| C2H1g27421 | 1:5,000,254-5,002,198 | - | C1H1g13068 | CX1g004390 | LOC_Os01g10630 | Os01g0203300 | - | Detail |
| C2H1g21431 | 1:5,008,131-5,008,454 | + | - | CX1g004397 | LOC_Os01g10640 | Os01g0203400 | - | Detail |
| C2H1g16935 | 1:5,020,559-5,022,124 | - | C1H1g00815 | CX1g002059 | LOC_Os01g10680 | Os01g0203800 | - | Detail |
| C2H1g16705 | 1:5,041,036-5,045,561 | - | C1H1g30796 | CX1g005785 | LOC_Os01g10690 | Os01g0204000 | - | Detail |
| C2H1g09104 | 1:5,049,551-5,061,780 | - | C1H1g01843 | - | - | - | - | Detail |
| C2H1g25154 | 1:5,062,654-5,063,064 | - | - | CX1g004812 | LOC_Os01g10740 | - | - | Detail |
| C2H1g14777 | 1:5,063,389-5,063,692 | + | C1H1g24281 | CX1g003100 | LOC_Os01g10790 | Os01g0205100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025793 | 3:12,761,996-12,765,213 | + | C1H3g24694 | C2H3g11722 | LOC_Os03g25030 | Os03g0365800 | HTA1 | Detail |
| CX3g030240 | 3:12,766,458-12,769,828 | + | C1H3g02602 | C2H3g14009 | LOC_Os03g25040 | Os03g0365900 | - | Detail |
| CX3g028892 | 3:12,771,871-12,773,454 | - | C1H3g23692 | C2H3g02613 | LOC_Os03g25050 | Os03g0366000 | - | Detail |
| CX3g027798 | 3:12,779,726-12,780,049 | - | - | - | LOC_Os03g25060 | Os03g0366100 | - | Detail |
| CX3g027604 | 3:12,787,144-12,787,326 | + | - | - | - | - | - | Detail |
| CX3g026420 | 3:12,794,736-12,801,251 | + | C1H3g05133 | C2H3g02942 | LOC_Os03g25070 | Os03g0366200 | OsCBK | Detail |
| CX3g028908 | 3:12,802,241-12,803,203 | - | - | - | LOC_Os03g25080 | Os03g0366350 | - | Detail |
| CX3g029824 | 3:12,807,704-12,811,869 | + | C1H3g00297 | C2H3g20719 | LOC_Os03g25110 | Os03g0366700 | - | Detail |
| CX3g026720 | 3:12,813,511-12,815,911 | - | C1H3g09693 | C2H3g16161 | LOC_Os03g25120 | Os03g0366800 | OsHsfB4d | Detail |
| CX3g027548 | 3:12,817,929-12,818,138 | - | - | - | - | - | - | Detail |
| CX3g030531 | 3:12,829,561-12,839,514 | + | C1H3g11212 | C2H3g05889 | LOC_Os03g25140 | Os03g0367000 | - | Detail |
| CX3g026873 | 3:12,850,657-12,856,927 | + | C1H3g27498 | C2H3g05330 | LOC_Os03g25150 | Os03g0367200 | - | Detail |
| CX3g026804 | 3:12,882,226-12,885,351 | + | C1H3g16020 | C2H3g27128 | LOC_Os03g25260 | Os03g0367800 | - | Detail |
| CX3g026151 | 3:12,890,841-12,892,650 | + | C1H3g25920 | C2H3g07803 | LOC_Os03g25270 | Os03g0367900 | - | Detail |
| CX3g025169 | 3:12,902,312-12,903,393 | + | C1H3g26587 | C2H3g22531 | LOC_Os03g25280 | Os03g0368000 | - | Detail |
| CX3g025674 | 3:12,911,457-12,913,217 | + | C1H3g13259 | C2H3g27289 | LOC_Os03g25320 | Os03g0368300 | - | Detail |
| CX3g029980 | 3:12,914,843-12,920,351 | - | C1H3g15720 | C2H3g05845 | - | Os03g0700400 | LOX-3 | Detail |
| CX3g026606 | 3:12,921,528-12,921,779 | - | - | - | - | - | - | Detail |
| CX3g029554 | 3:12,922,091-12,922,480 | + | - | - | LOC_Os03g30088 | - | - | Detail |
| CX3g029507 | 3:12,923,226-12,923,519 | + | - | - | - | - | - | Detail |