| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g10005 | 2:28,207,592-28,213,840 | + | C2H2g04852 | CX2g023479 | LOC_Os02g50370 | Os02g0736600 | - | Detail |
| C1H2g07594 | 2:28,214,316-28,214,573 | - | C2H2g22765 | CX2g023200 | - | Os02g0736700 | - | Detail |
| C1H2g14249 | 2:28,227,982-28,228,206 | + | C2H2g21919 | - | LOC_Os02g50450 | Os02g0737950 | - | Detail |
| C1H2g30478 | 2:28,228,722-28,229,055 | + | - | - | - | Os02g0737950 | - | Detail |
| C1H2g00500 | 2:28,261,361-28,267,274 | + | C2H2g16308 | CX2g021204 | LOC_Os02g50480 | Os02g0738400 | OHK5, OHK5, Ohk5, OsHK1, OsHK6, HK, Crl1a | Detail |
| C1H2g09387 | 2:28,276,045-28,279,625 | + | C2H2g12754 | CX2g020936 | LOC_Os02g50490 | Os02g0738600 | - | Detail |
| C1H2g28406 | 2:28,287,671-28,297,491 | - | C2H2g25440 | CX2g022539 | LOC_Os02g50550 | Os02g0738900 | BC3, bc3, bc-3, OsDRP2B, DRP2B | Detail |
| C1H2g30401 | 2:28,297,507-28,297,704 | - | - | CX2g022539 | - | - | - | Detail |
| C1H2g06055 | 2:28,299,126-28,308,398 | + | C2H2g10338 | CX2g024755 | LOC_Os02g50560 | Os02g0739000 | - | Detail |
| C1H2g22155 | 2:28,308,325-28,312,785 | - | C2H2g19070 | CX2g024527 | LOC_Os02g50570 | Os02g0739100 | - | Detail |
| C1H2g19740 | 2:28,332,807-28,336,612 | - | C2H2g13279 | CX2g023255 | LOC_Os02g50620 | Os02g0739600 | - | Detail |
| C1H2g02446 | 2:28,338,313-28,341,142 | - | C2H2g20599 | CX2g021394 | LOC_Os02g50630 | Os02g0739700 | OsE2Fe-1 | Detail |
| C1H2g01602 | 2:28,343,991-28,348,147 | - | C2H2g22496 | CX2g023514 | LOC_Os02g50640 | Os02g0739900 | - | Detail |
| C1H2g14498 | 2:28,363,242-28,369,337 | - | C2H2g07910 | CX2g021304 | LOC_Os02g50680 | Os02g0740300 | - | Detail |
| C1H2g26149 | 2:28,370,112-28,371,544 | - | C2H2g25866 | CX2g024066 | LOC_Os02g50690 | Os02g0740400 | - | Detail |
| C1H2g27425 | 2:28,376,019-28,377,561 | + | C2H2g26692 | CX2g023069 | LOC_Os02g50700 | Os02g0740500 | - | Detail |
| C1H2g04140 | 2:28,382,759-28,385,516 | - | C2H2g23006 | CX2g024544 | LOC_Os02g50710 | Os02g0740600 | - | Detail |
| C1H2g20437 | 2:28,398,757-28,402,464 | + | C2H2g20295 | CX2g020505 | LOC_Os02g50760 | Os02g0741100 | - | Detail |
| C1H2g04090 | 2:28,407,528-28,412,353 | + | C2H2g20379 | CX2g020607 | LOC_Os02g50780 | Os02g0741300 | - | Detail |
| C1H2g03541 | 2:28,412,827-28,437,570 | - | C2H2g26992 | CX2g021407 | LOC_Os02g50790 | Os02g0741500 | OsTPR | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025310 | 3:11,891,779-11,892,520 | + | C1H3g17589 | C2H3g21910 | - | - | - | Detail |
| CX3g027240 | 3:11,893,965-11,897,136 | + | C1H3g30316 | C2H3g27063 | LOC_Os03g22770 | Os03g0351100 | - | Detail |
| CX3g031257 | 3:11,897,894-11,899,126 | - | C1H3g20290 | C2H3g12969 | LOC_Os03g22780 | Os03g0351200 | - | Detail |
| CX3g027708 | 3:11,900,407-11,900,586 | - | - | - | - | - | - | Detail |
| CX3g030954 | 3:11,904,908-11,906,544 | + | C1H3g29465 | C2H3g03023 | LOC_Os03g22790 | Os03g0351300 | - | Detail |
| CX3g027882 | 3:11,908,514-11,911,177 | - | C1H3g17947 | C2H3g26186 | LOC_Os03g22800 | Os03g0351400 | - | Detail |
| CX3g025842 | 3:11,922,484-11,922,633 | + | - | - | LOC_Os11g12240 | Os11g0476333 | - | Detail |
| CX3g029896 | 3:11,928,501-11,928,650 | + | - | - | LOC_Os11g12240 | Os11g0476333 | - | Detail |
| CX3g027904 | 3:11,932,308-11,933,834 | + | C1H3g29229 | C2H3g20435 | LOC_Os03g22810 | Os03g0351500 | CSD1 | Detail |
| CX3g028544 | 3:11,939,153-11,939,693 | + | - | - | LOC_Os03g22820 | Os03g0351700 | - | Detail |
| CX3g025092 | 3:11,949,146-11,952,566 | - | C1H3g18570 | C2H3g14393 | LOC_Os03g22830 | Os03g0351800 | - | Detail |
| CX3g030148 | 3:11,960,462-11,961,502 | + | C1H3g29297 | C2H3g19033 | LOC_Os03g12150 | Os03g0838100 | - | Detail |
| CX3g030955 | 3:11,965,220-11,965,555 | + | - | - | - | - | - | Detail |
| CX3g027668 | 3:11,970,510-11,974,563 | + | C1H3g27962 | C2H3g15700 | LOC_Os03g22870 | Os03g0352200 | - | Detail |
| CX3g025721 | 3:11,975,414-11,978,034 | - | C1H3g04417 | C2H3g04437 | LOC_Os03g22880 | Os03g0352300 | - | Detail |
| CX3g030381 | 3:11,979,932-11,984,296 | + | C1H3g10842 | C2H3g25554 | LOC_Os03g22890 | Os03g0352400 | OsNug2 | Detail |
| CX3g025999 | 3:11,989,457-12,000,134 | + | C1H3g16038 | C2H3g13717 | LOC_Os03g22900 | Os03g0352500 | OsINO80 | Detail |
| CX3g025916 | 3:12,017,071-12,019,107 | - | C1H3g08430 | C2H3g17584 | LOC_Os03g22950 | Os03g0352800 | OsMTACP2, CTB18 | Detail |
| CX3g029374 | 3:12,021,014-12,022,051 | + | C1H3g07024 | C2H3g12615 | LOC_Os03g22960 | Os03g0353000 | - | Detail |
| CX3g029843 | 3:12,024,351-12,027,589 | + | C1H3g09018 | C2H3g04581 | LOC_Os03g22990 | Os03g0353300 | - | Detail |