| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13692 | 3:6,667,446-6,668,126 | - | C2H3g07962 | CX3g030665 | LOC_Os03g13870 | Os03g0242300 | - | Detail |
| C1H3g29006 | 3:6,675,963-6,676,322 | + | C2H3g22214 | CX3g028489 | - | - | - | Detail |
| C1H3g00814 | 3:6,680,713-6,683,061 | - | C2H3g07310 | CX3g028277 | LOC_Os03g13930 | Os03g0242900 | - | Detail |
| C1H3g19058 | 3:6,686,888-6,689,587 | - | C2H3g16149 | CX3g027562 | LOC_Os03g13950 | Os03g0243100 | - | Detail |
| C1H3g13143 | 3:6,694,354-6,698,831 | - | C2H3g16858 | CX3g026057 | LOC_Os03g13960 | Os03g0243200 | - | Detail |
| C1H3g26726 | 3:6,701,454-6,705,737 | - | C2H3g16858 | CX3g026485 | LOC_Os03g13970 | Os03g0243300 | OsRpn10, OsvWA9 | Detail |
| C1H3g06194 | 3:6,715,265-6,720,744 | + | C2H3g01768 | CX3g026209 | LOC_Os03g14000 | Os03g0243600 | OsACBP5 | Detail |
| C1H3g04646 | 3:6,723,062-6,726,338 | + | C2H3g11388 | CX3g028457 | LOC_Os03g14010 | Os03g0243700 | - | Detail |
| C1H3g06812 | 3:6,726,489-6,731,922 | + | C2H3g14947 | - | LOC_Os03g14020 | Os03g0243800 | - | Detail |
| C1H3g17833 | 3:6,734,748-6,737,412 | - | C2H3g18377 | CX3g024990 | LOC_Os03g14030 | Os03g0243900 | - | Detail |
| C1H3g18451 | 3:6,739,807-6,741,874 | + | C2H3g07558 | CX3g029567 | LOC_Os03g14040 | Os03g0244000 | - | Detail |
| C1H3g18445 | 3:6,749,697-6,753,762 | + | C2H3g02531 | CX3g030186 | LOC_Os03g14050 | Os03g0244200 | - | Detail |
| C1H3g01802 | 3:6,764,514-6,768,416 | + | C2H3g30391 | CX3g029577 | LOC_Os03g14080 | Os03g0244600 | - | Detail |
| C1H3g17574 | 3:6,774,248-6,776,191 | - | C2H3g04380 | CX3g025151 | LOC_Os03g14090 | Os03g0244700 | - | Detail |
| C1H3g19459 | 3:6,784,413-6,784,904 | - | C2H3g24294 | CX3g030165 | LOC_Os03g20730 | Os03g0244950 | - | Detail |
| C1H3g03763 | 3:6,786,407-6,789,583 | + | C2H3g18030 | CX3g027701 | LOC_Os03g14120 | Os03g0245100 | - | Detail |
| C1H3g06553 | 3:6,790,439-6,791,841 | - | C2H3g03452 | CX3g026036 | LOC_Os03g14130 | Os03g0245200 | - | Detail |
| C1H3g27152 | 3:6,794,210-6,795,381 | - | C2H3g01214 | CX3g027348 | LOC_Os03g14140 | Os03g0245300 | - | Detail |
| C1H3g23422 | 3:6,797,036-6,797,980 | - | C2H3g21217 | CX3g029867 | LOC_Os03g14150 | Os03g0245500 | GAPLESS2 | Detail |
| C1H3g12594 | 3:6,802,446-6,804,044 | - | C2H3g18121 | CX3g028205 | LOC_Os03g14170 | Os03g0245700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025595 | 3:10,846,493-10,850,793 | - | C1H3g28228 | C2H3g14604 | LOC_Os03g21250 | Os03g0330000 | - | Detail |
| CX3g026436 | 3:10,861,668-10,865,954 | + | C1H3g13172 | C2H3g27204 | LOC_Os03g21260 | Os03g0330200 | - | Detail |
| CX3g027510 | 3:10,866,772-10,872,002 | - | C1H3g07101 | C2H3g15921 | LOC_Os03g21270 | Os03g0330300 | - | Detail |
| CX3g030370 | 3:10,891,354-10,894,335 | + | C1H3g17399 | C2H3g16525 | LOC_Os03g21370 | Os03g0331600 | CS3, OsLCAA | Detail |
| CX3g028976 | 3:10,896,878-10,897,453 | - | C1H3g03324 | C2H3g29448 | LOC_Os03g21380 | Os03g0331700 | - | Detail |
| CX3g026949 | 3:10,903,304-10,904,009 | + | C1H3g28515 | C2H3g00436 | LOC_Os03g21390 | Os03g0331900 | - | Detail |
| CX3g025397 | 3:10,906,775-10,914,849 | - | C1H3g15931 | C2H3g14433 | LOC_Os03g21400 | Os03g0332100 | CYP714B2 | Detail |
| CX3g028546 | 3:10,920,326-10,920,805 | - | - | - | - | - | - | Detail |
| CX3g030007 | 3:10,929,627-10,932,238 | + | C1H3g27306 | C2H3g10310 | LOC_Os03g21450 | Os03g0130800 | - | Detail |
| CX3g028069 | 3:10,932,657-10,935,317 | - | C1H3g15898 | C2H3g17481 | LOC_Os03g21460 | Os03g0332400 | GLYII-2, OsGLYII2, GLYII2, OsGLYII-2 | Detail |
| CX3g029311 | 3:10,940,906-10,942,803 | - | C1H3g21366 | C2H3g22879 | - | Os03g0332500 | - | Detail |
| CX3g027147 | 3:10,944,999-10,947,022 | - | C1H3g21148 | C2H3g01804 | LOC_Os03g21480 | Os03g0332533 | - | Detail |
| CX3g025440 | 3:10,950,455-10,954,297 | - | C1H3g11764 | C2H3g10583 | LOC_Os03g21490 | Os03g0332700 | - | Detail |
| CX3g027316 | 3:10,963,853-10,965,936 | + | C1H3g02450 | C2H3g24190 | LOC_Os03g21510 | Os03g0332900 | - | Detail |
| CX3g028180 | 3:10,966,860-10,970,933 | - | C1H3g13994 | C2H3g30311 | LOC_Os03g21520 | Os03g0333000 | - | Detail |
| CX3g029941 | 3:10,971,903-10,981,631 | + | C1H3g12459 | C2H3g26938 | LOC_Os03g21530 | Os03g0333100 | - | Detail |
| CX3g028103 | 3:10,983,364-10,986,048 | + | C1H3g29664 | C2H3g19269 | LOC_Os03g21540 | Os03g0333200 | DRUS1, OsCrRLK1L8, CrRLK1L8, FLR1 | Detail |
| CX3g028855 | 3:10,990,273-10,994,753 | + | C1H3g30788 | C2H3g24047 | LOC_Os03g21550 | Os03g0333300 | - | Detail |
| CX3g028002 | 3:10,995,281-10,995,787 | + | C1H3g06087 | C2H3g24886 | LOC_Os03g21560 | Os03g0333400 | - | Detail |
| CX3g028500 | 3:10,996,719-10,998,035 | - | C1H3g05344 | C2H3g22866 | LOC_Os03g21700 | Os03g0335100 | - | Detail |