| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g28511 | 3:29,678,395-29,684,235 | + | C2H3g01139 | CX3g026186 | LOC_Os03g55760 | Os03g0766500 | - | Detail |
| C1H3g11551 | 3:29,687,040-29,690,346 | + | C2H3g02791 | CX3g026597 | LOC_Os03g55784 | Os03g0766900 | - | Detail |
| C1H3g16165 | 3:29,702,028-29,705,343 | - | C2H3g02036 | CX3g026749 | LOC_Os03g55820 | Os03g0767500 | - | Detail |
| C1H3g20103 | 3:29,709,048-29,710,559 | + | C2H3g17261 | - | LOC_Os03g55830 | Os03g0767600 | - | Detail |
| C1H3g10730 | 3:29,710,969-29,712,911 | + | C2H3g25481 | CX3g027804 | LOC_Os03g55830 | Os03g0767600 | - | Detail |
| C1H3g31861 | 3:29,715,687-29,718,113 | + | C2H3g21501 | CX3g028593 | LOC_Os03g55850 | Os03g0767800 | - | Detail |
| C1H3g14127 | 3:29,719,059-29,719,939 | + | C2H3g01498 | CX3g024946 | LOC_Os03g55870 | Os03g0767900 | - | Detail |
| C1H3g26336 | 3:29,727,918-29,732,100 | - | C2H3g08266 | CX3g028693 | LOC_Os03g55890 | Os03g0769000 | - | Detail |
| C1H3g24628 | 3:29,739,501-29,744,230 | - | C2H3g19989 | CX3g027389 | LOC_Os03g55920 | Os03g0769050 | - | Detail |
| C1H3g25789 | 3:29,745,160-29,746,665 | - | C2H3g27533 | CX3g028168 | LOC_Os03g55930 | Os03g0769100 | - | Detail |
| C1H3g19145 | 3:29,754,537-29,758,327 | + | C2H3g12948 | CX3g028504 | LOC_Os03g55950 | Os03g0769400 | - | Detail |
| C1H3g25186 | 3:29,761,091-29,763,906 | - | C2H3g22257 | CX3g028565 | LOC_Os03g55970 | Os03g0769600 | - | Detail |
| C1H3g09664 | 3:29,781,351-29,781,905 | + | C2H3g01939 | CX3g028075 | LOC_Os03g56010 | Os03g0770000 | - | Detail |
| C1H3g00630 | 3:29,783,961-29,784,704 | + | - | - | - | - | - | Detail |
| C1H3g17718 | 3:29,792,098-29,793,860 | + | C2H3g30222 | CX3g030368 | LOC_Os03g56020 | Os03g0770100 | - | Detail |
| C1H3g16948 | 3:29,820,097-29,824,011 | + | C2H3g30157 | CX3g030242 | LOC_Os03g56050 | Os03g0770700 | - | Detail |
| C1H3g26645 | 3:29,826,799-29,830,856 | - | C2H3g09554 | CX3g030133 | LOC_Os03g56060 | Os03g0770800 | OsCSLC9 | Detail |
| C1H3g03394 | 3:29,839,102-29,841,454 | - | C2H3g10825 | CX3g029202 | LOC_Os03g56070 | Os03g0770900 | - | Detail |
| C1H3g11674 | 3:29,853,307-29,854,565 | - | C2H3g08836 | CX3g029828 | LOC_Os03g56090 | Os03g0771100 | OsMYB36c | Detail |
| C1H3g05785 | 3:29,865,263-29,870,473 | + | C2H3g08036 | CX3g025561 | LOC_Os03g56110 | Os03g0771500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025827 | 3:10,633,670-10,635,332 | - | C1H3g15600 | C2H3g24174 | LOC_Os03g21000 | Os03g0326500 | - | Detail |
| CX3g029985 | 3:10,638,774-10,644,578 | + | C1H3g21481 | C2H3g04323 | LOC_Os03g08400 | - | - | Detail |
| CX3g025696 | 3:10,646,714-10,651,010 | - | C1H3g09196 | C2H3g29428 | LOC_Os03g21020 | Os03g0326600 | - | Detail |
| CX3g028720 | 3:10,657,482-10,658,793 | - | C1H3g00133 | C2H3g08708 | LOC_Os03g21030 | Os03g0327100 | OsNAC17 | Detail |
| CX3g026693 | 3:10,673,979-10,674,623 | + | C1H3g02748 | - | - | - | - | Detail |
| CX3g025610 | 3:10,679,977-10,683,353 | - | C1H3g01506 | C2H3g15491 | LOC_Os12g23430 | Os03g0822900 | - | Detail |
| CX3g030838 | 3:10,694,831-10,696,624 | - | C1H3g19758 | C2H3g22568 | LOC_Os03g21060 | Os03g0327800 | NAC58, OsNAP, ONAC058, ONAC58, PS1 | Detail |
| CX3g027582 | 3:10,700,686-10,701,009 | + | - | - | - | - | - | Detail |
| CX3g029575 | 3:10,713,406-10,726,838 | + | C1H3g10903 | C2H3g01320 | LOC_Os03g21080 | Os03g0328000 | OsSPK1 | Detail |
| CX3g027049 | 3:10,728,095-10,731,330 | - | C1H3g31035 | C2H3g29789 | LOC_Os03g21090 | Os03g0328100 | - | Detail |
| CX3g029317 | 3:10,736,076-10,737,916 | + | C1H3g04874 | C2H3g13174 | LOC_Os03g21110 | Os03g0328300 | - | Detail |
| CX3g030285 | 3:10,738,439-10,743,268 | - | C1H3g01487 | C2H3g07542 | LOC_Os03g21120 | Os03g0328400 | OsAPY1 | Detail |
| CX3g028885 | 3:10,743,743-10,745,313 | + | C1H3g08025 | C2H3g17363 | - | Os03g0789600 | - | Detail |
| CX3g028818 | 3:10,764,602-10,767,504 | + | C1H3g07714 | C2H3g24667 | LOC_Os03g21140 | Os03g0328900 | - | Detail |
| CX3g030458 | 3:10,794,638-10,794,823 | + | - | - | - | - | - | Detail |
| CX3g027853 | 3:10,798,372-10,801,365 | + | C1H3g05140 | C2H3g06727 | LOC_Os03g21160 | Os03g0329200 | - | Detail |
| CX3g029596 | 3:10,817,377-10,820,826 | - | C1H3g26417 | C2H3g01256 | LOC_Os03g21210 | Os03g0329500 | OsGH9A1, OsGLU1 | Detail |
| CX3g024979 | 3:10,828,663-10,828,836 | + | - | - | - | - | - | Detail |
| CX3g030183 | 3:10,829,787-10,834,455 | + | C1H3g12540 | C2H3g20489 | LOC_Os03g21230 | Os03g0329700 | - | Detail |
| CX3g028538 | 3:10,840,065-10,843,223 | + | C1H3g04812 | C2H3g04364 | LOC_Os03g21240 | Os03g0329900 | PHR1, OsPHR1 | Detail |