| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g13669 | 5:7,463,795-7,468,267 | - | C2H5g10863 | CX5g039794 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| C1H5g11478 | 5:7,471,901-7,473,157 | - | C2H5g12394 | CX5g039447 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| C1H5g13415 | 5:7,474,950-7,479,303 | + | C2H5g03213 | CX5g038303 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| C1H5g25482 | 5:7,481,388-7,484,201 | + | C2H5g18069 | CX5g038303 | - | Os05g0251500 | - | Detail |
| C1H5g22880 | 5:7,487,995-7,491,891 | + | C2H5g11253 | CX5g037603 | - | - | - | Detail |
| C1H5g03577 | 5:7,489,093-7,494,918 | - | C2H5g17103 | CX5g040268 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| C1H5g13508 | 5:7,497,940-7,502,969 | - | C2H5g24772 | CX5g041044 | LOC_Os05g16290 | Os05g0252000 | - | Detail |
| C1H5g26814 | 5:7,514,364-7,516,023 | - | C2H5g01822 | CX5g037929 | LOC_Os05g16300 | Os05g0252100 | - | Detail |
| C1H5g13165 | 5:7,560,818-7,561,289 | + | C2H5g15484 | CX5g039636 | LOC_Os05g16420 | Os05g0253200 | - | Detail |
| C1H5g26412 | 5:7,633,753-7,637,377 | + | C2H5g01726 | CX5g040627 | LOC_Os05g16630 | Os05g0255600 | - | Detail |
| C1H5g13724 | 5:7,640,895-7,645,875 | + | C2H5g24880 | CX5g040616 | LOC_Os05g16640 | Os05g0255800 | - | Detail |
| C1H5g15674 | 5:7,650,875-7,656,493 | + | C2H5g00655 | CX5g039252 | LOC_Os05g16660 | Os05g0256000 | - | Detail |
| C1H5g11784 | 5:7,669,303-7,680,295 | + | C2H5g00991 | CX5g038401 | LOC_Os05g16430 | Os05g0256100 | - | Detail |
| C1H5g15820 | 5:7,730,571-7,741,013 | + | C2H5g02628 | CX5g040531 | LOC_Os05g16430 | Os05g0256500 | - | Detail |
| C1H5g24182 | 5:7,766,659-7,776,349 | + | C2H5g15704 | CX5g039056 | LOC_Os05g16430 | Os05g0257100 | - | Detail |
| C1H5g28432 | 5:7,780,957-7,781,515 | + | C2H5g05784 | CX3g030223 | - | - | - | Detail |
| C1H5g26063 | 5:7,817,075-7,823,465 | + | C2H5g12556 | CX5g036934 | LOC_Os05g16420 | Os05g0253200 | - | Detail |
| C1H5g03004 | 5:7,845,727-7,846,645 | + | C2H5g12556 | CX5g038401 | - | Os05g0261700 | - | Detail |
| C1H5g04336 | 5:7,847,001-7,848,449 | + | C2H5g07983 | CX5g036934 | LOC_Os05g16670 | Os05g0263100 | - | Detail |
| C1H5g16401 | 5:7,855,230-7,860,196 | + | C2H5g15568 | CX5g038074 | LOC_Os05g16740 | Os05g0263100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g028739 | 3:10,036,794-10,038,740 | + | C1H3g05706 | C2H3g04215 | LOC_Os03g19980 | Os03g0314400 | - | Detail |
| CX3g029467 | 3:10,049,555-10,052,640 | + | C1H3g20485 | C2H3g25214 | LOC_Os03g19990 | Os03g0314500 | - | Detail |
| CX3g026855 | 3:10,055,092-10,055,274 | - | - | - | - | - | - | Detail |
| CX3g027957 | 3:10,057,106-10,061,627 | + | C1H3g18195 | C2H3g21031 | LOC_Os03g20010 | Os03g0314700 | - | Detail |
| CX3g027685 | 3:10,070,065-10,074,202 | - | C1H3g19914 | C2H3g06553 | LOC_Os03g20020 | Os03g0314800 | OsNIN1 | Detail |
| CX3g026874 | 3:10,077,777-10,079,061 | + | C1H3g29631 | C2H3g07740 | - | - | - | Detail |
| CX3g029724 | 3:10,092,471-10,093,926 | - | C1H3g14664 | C2H3g15105 | LOC_Os03g20090 | Os03g0315400 | OsMYB2 | Detail |
| CX3g026905 | 3:10,109,566-10,109,772 | + | - | - | - | - | - | Detail |
| CX3g031333 | 3:10,117,436-10,121,424 | - | C1H3g20197 | C2H3g14730 | LOC_Os03g20100 | Os03g0315800 | ASL4 | Detail |
| CX3g026763 | 3:10,133,250-10,134,565 | + | C1H3g21365 | C2H3g02965 | LOC_Os03g20120 | Os03g0316200 | OsGolS1 | Detail |
| CX3g029632 | 3:10,136,299-10,136,472 | + | - | - | - | Os02g0188201 | - | Detail |
| CX3g027966 | 3:10,145,607-10,148,259 | + | C1H3g25401 | C2H3g20528 | LOC_Os03g20170 | Os03g0316900 | OsABCI16 | Detail |
| CX3g028132 | 3:10,152,219-10,155,814 | + | C1H3g25351 | C2H3g18428 | LOC_Os03g20180 | Os03g0317000 | - | Detail |
| CX3g030095 | 3:10,157,668-10,159,788 | + | C1H3g17147 | C2H3g29051 | LOC_Os03g20190 | Os03g0317100 | - | Detail |
| CX3g028796 | 3:10,164,525-10,166,279 | + | C1H3g11404 | C2H3g17176 | LOC_Os03g20210 | Os03g0317300 | - | Detail |
| CX3g026260 | 3:10,166,908-10,168,209 | + | C1H3g16001 | C2H3g05954 | LOC_Os03g20230 | Os03g0318400 | - | Detail |
| CX3g025491 | 3:10,185,507-10,186,718 | + | C1H3g07890 | C2H3g08312 | LOC_Os03g20230 | Os03g0317900 | - | Detail |
| CX3g028957 | 3:10,193,759-10,195,053 | + | C1H3g20479 | C2H3g29183 | LOC_Os03g20290 | Os03g0318400 | - | Detail |
| CX3g024974 | 3:10,196,697-10,202,396 | - | C1H3g31254 | C2H3g10315 | LOC_Os03g20300 | Os03g0318500 | - | Detail |
| CX3g025701 | 3:10,203,208-10,207,040 | - | C1H3g27797 | C2H3g15586 | LOC_Os03g20310 | Os03g0318600 | OsTGA3 | Detail |