| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g24459 | 2:1,495,230-1,498,367 | + | C2H2g01875 | CX2g022118 | LOC_Os02g03860 | Os02g0131300 | - | Detail |
| C1H2g13894 | 2:1,501,498-1,508,193 | - | C2H2g19732 | CX2g019313 | LOC_Os02g03870 | Os02g0131400 | - | Detail |
| C1H2g25126 | 2:1,513,815-1,514,207 | - | - | CX2g023899 | - | - | - | Detail |
| C1H2g29540 | 2:1,518,426-1,518,683 | + | - | CX2g022522 | LOC_Os02g03880 | Os02g0131600 | - | Detail |
| C1H2g05041 | 2:1,519,692-1,523,049 | - | C2H2g21277 | CX2g020563 | LOC_Os02g03890 | Os02g0131700 | - | Detail |
| C1H2g18848 | 2:1,524,789-1,528,602 | - | C2H2g13835 | CX2g019095 | LOC_Os02g03900 | Os02g0131800 | NRAMP4, OsNRAMP4, Nrat1, Nramp6, OsNRAT1 | Detail |
| C1H2g00924 | 2:1,532,795-1,537,571 | - | C2H2g22540 | CX2g019802 | LOC_Os02g03930 | Os02g0132100 | - | Detail |
| C1H2g01456 | 2:1,538,000-1,541,517 | - | C2H2g12575 | CX2g018957 | LOC_Os02g03940 | Os02g0132200 | - | Detail |
| C1H2g17223 | 2:1,546,073-1,548,934 | + | C2H2g02428 | CX2g021626 | LOC_Os02g03950 | Os02g0132300 | - | Detail |
| C1H2g04467 | 2:1,560,120-1,560,732 | - | C2H2g10653 | CX2g021994 | LOC_Os02g03960 | Os02g0132500 | OsbZIP14 | Detail |
| C1H2g04799 | 2:1,572,574-1,581,526 | - | C2H2g24972 | CX2g024093 | LOC_Os02g03970 | Os02g0132600 | - | Detail |
| C1H2g29927 | 2:1,597,014-1,599,940 | - | C2H2g13962 | CX2g021970 | LOC_Os02g03990 | - | - | Detail |
| C1H2g20335 | 2:1,603,995-1,607,745 | - | C2H2g19617 | CX2g022112 | LOC_Os02g04010 | Os02g0133000 | - | Detail |
| C1H2g27472 | 2:1,613,761-1,618,866 | + | C2H2g07026 | CX2g024675 | LOC_Os02g04020 | Os02g0133100 | OsSec14-5 | Detail |
| C1H2g25242 | 2:1,619,453-1,623,665 | - | C2H2g19264 | CX2g019449 | LOC_Os02g04030 | Os02g0133200 | OsSec14-6 | Detail |
| C1H2g02951 | 2:1,624,793-1,634,812 | - | C2H2g26953 | CX2g024350 | LOC_Os02g04040 | Os02g0133300 | - | Detail |
| C1H2g30829 | 2:1,636,601-1,637,041 | - | C2H2g26953 | CX2g024350 | LOC_Os02g04060 | Os02g0133300 | - | Detail |
| C1H2g18206 | 2:1,638,458-1,646,512 | - | C2H2g26953 | CX2g019521 | LOC_Os02g04080 | Os02g0133400 | - | Detail |
| C1H2g21252 | 2:1,647,027-1,647,830 | - | C2H2g26953 | CX2g019521 | LOC_Os02g04090 | - | - | Detail |
| C1H2g25852 | 2:1,650,271-1,653,694 | + | C2H2g03692 | CX2g021792 | LOC_Os02g04100 | Os02g0133800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g028739 | 3:10,036,794-10,038,740 | + | C1H3g05706 | C2H3g04215 | LOC_Os03g19980 | Os03g0314400 | - | Detail |
| CX3g029467 | 3:10,049,555-10,052,640 | + | C1H3g20485 | C2H3g25214 | LOC_Os03g19990 | Os03g0314500 | - | Detail |
| CX3g026855 | 3:10,055,092-10,055,274 | - | - | - | - | - | - | Detail |
| CX3g027957 | 3:10,057,106-10,061,627 | + | C1H3g18195 | C2H3g21031 | LOC_Os03g20010 | Os03g0314700 | - | Detail |
| CX3g027685 | 3:10,070,065-10,074,202 | - | C1H3g19914 | C2H3g06553 | LOC_Os03g20020 | Os03g0314800 | OsNIN1 | Detail |
| CX3g026874 | 3:10,077,777-10,079,061 | + | C1H3g29631 | C2H3g07740 | - | - | - | Detail |
| CX3g029724 | 3:10,092,471-10,093,926 | - | C1H3g14664 | C2H3g15105 | LOC_Os03g20090 | Os03g0315400 | OsMYB2 | Detail |
| CX3g026905 | 3:10,109,566-10,109,772 | + | - | - | - | - | - | Detail |
| CX3g031333 | 3:10,117,436-10,121,424 | - | C1H3g20197 | C2H3g14730 | LOC_Os03g20100 | Os03g0315800 | ASL4 | Detail |
| CX3g026763 | 3:10,133,250-10,134,565 | + | C1H3g21365 | C2H3g02965 | LOC_Os03g20120 | Os03g0316200 | OsGolS1 | Detail |
| CX3g029632 | 3:10,136,299-10,136,472 | + | - | - | - | Os02g0188201 | - | Detail |
| CX3g027966 | 3:10,145,607-10,148,259 | + | C1H3g25401 | C2H3g20528 | LOC_Os03g20170 | Os03g0316900 | OsABCI16 | Detail |
| CX3g028132 | 3:10,152,219-10,155,814 | + | C1H3g25351 | C2H3g18428 | LOC_Os03g20180 | Os03g0317000 | - | Detail |
| CX3g030095 | 3:10,157,668-10,159,788 | + | C1H3g17147 | C2H3g29051 | LOC_Os03g20190 | Os03g0317100 | - | Detail |
| CX3g028796 | 3:10,164,525-10,166,279 | + | C1H3g11404 | C2H3g17176 | LOC_Os03g20210 | Os03g0317300 | - | Detail |
| CX3g026260 | 3:10,166,908-10,168,209 | + | C1H3g16001 | C2H3g05954 | LOC_Os03g20230 | Os03g0318400 | - | Detail |
| CX3g025491 | 3:10,185,507-10,186,718 | + | C1H3g07890 | C2H3g08312 | LOC_Os03g20230 | Os03g0317900 | - | Detail |
| CX3g028957 | 3:10,193,759-10,195,053 | + | C1H3g20479 | C2H3g29183 | LOC_Os03g20290 | Os03g0318400 | - | Detail |
| CX3g024974 | 3:10,196,697-10,202,396 | - | C1H3g31254 | C2H3g10315 | LOC_Os03g20300 | Os03g0318500 | - | Detail |
| CX3g025701 | 3:10,203,208-10,207,040 | - | C1H3g27797 | C2H3g15586 | LOC_Os03g20310 | Os03g0318600 | OsTGA3 | Detail |