| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g28114 | 9:127,927-128,471 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g14009 | 9:138,087-138,631 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g27378 | 9:148,248-148,792 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g01621 | 9:158,408-158,952 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g09939 | 9:168,569-169,113 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g10841 | 9:222,155-222,469 | + | - | - | - | - | - | Detail |
| C1H9g20378 | 9:225,139-229,991 | - | C2H9g07486 | CX9g055204 | LOC_Os09g01140 | Os09g0100800 | OsGeBP11 | Detail |
| C1H9g29200 | 9:259,419-263,710 | - | C2H9g02141 | CX9g056163 | LOC_Os09g01290 | Os09g0101100 | - | Detail |
| C1H9g04128 | 9:301,326-311,063 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17462 | 9:311,725-312,382 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17478 | 9:331,713-332,598 | - | - | - | - | - | - | Detail |
| C1H9g27523 | 9:368,464-377,135 | + | C2H9g24411 | CX9g057870 | LOC_Os09g01590 | Os09g0103100 | - | Detail |
| C1H9g01741 | 9:380,162-385,109 | + | C2H9g22972 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C1H9g12264 | 9:397,300-402,931 | + | C2H9g07969 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C1H9g24389 | 9:405,379-412,173 | - | C2H9g23774 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C1H9g06955 | 9:441,136-447,435 | + | C2H9g22729 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C1H9g22354 | 9:471,216-474,715 | - | C2H9g16634 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C1H9g21586 | 9:474,785-477,542 | + | C2H9g14701 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C1H9g13033 | 9:512,612-515,182 | - | C2H9g17453 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C1H9g05252 | 9:558,682-560,315 | + | C2H9g11873 | CX9g056345 | LOC_Os07g15420 | Os09g0499600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g028739 | 3:10,036,794-10,038,740 | + | C1H3g05706 | C2H3g04215 | LOC_Os03g19980 | Os03g0314400 | - | Detail |
| CX3g029467 | 3:10,049,555-10,052,640 | + | C1H3g20485 | C2H3g25214 | LOC_Os03g19990 | Os03g0314500 | - | Detail |
| CX3g026855 | 3:10,055,092-10,055,274 | - | - | - | - | - | - | Detail |
| CX3g027957 | 3:10,057,106-10,061,627 | + | C1H3g18195 | C2H3g21031 | LOC_Os03g20010 | Os03g0314700 | - | Detail |
| CX3g027685 | 3:10,070,065-10,074,202 | - | C1H3g19914 | C2H3g06553 | LOC_Os03g20020 | Os03g0314800 | OsNIN1 | Detail |
| CX3g026874 | 3:10,077,777-10,079,061 | + | C1H3g29631 | C2H3g07740 | - | - | - | Detail |
| CX3g029724 | 3:10,092,471-10,093,926 | - | C1H3g14664 | C2H3g15105 | LOC_Os03g20090 | Os03g0315400 | OsMYB2 | Detail |
| CX3g026905 | 3:10,109,566-10,109,772 | + | - | - | - | - | - | Detail |
| CX3g031333 | 3:10,117,436-10,121,424 | - | C1H3g20197 | C2H3g14730 | LOC_Os03g20100 | Os03g0315800 | ASL4 | Detail |
| CX3g026763 | 3:10,133,250-10,134,565 | + | C1H3g21365 | C2H3g02965 | LOC_Os03g20120 | Os03g0316200 | OsGolS1 | Detail |
| CX3g029632 | 3:10,136,299-10,136,472 | + | - | - | - | Os02g0188201 | - | Detail |
| CX3g027966 | 3:10,145,607-10,148,259 | + | C1H3g25401 | C2H3g20528 | LOC_Os03g20170 | Os03g0316900 | OsABCI16 | Detail |
| CX3g028132 | 3:10,152,219-10,155,814 | + | C1H3g25351 | C2H3g18428 | LOC_Os03g20180 | Os03g0317000 | - | Detail |
| CX3g030095 | 3:10,157,668-10,159,788 | + | C1H3g17147 | C2H3g29051 | LOC_Os03g20190 | Os03g0317100 | - | Detail |
| CX3g028796 | 3:10,164,525-10,166,279 | + | C1H3g11404 | C2H3g17176 | LOC_Os03g20210 | Os03g0317300 | - | Detail |
| CX3g026260 | 3:10,166,908-10,168,209 | + | C1H3g16001 | C2H3g05954 | LOC_Os03g20230 | Os03g0318400 | - | Detail |
| CX3g025491 | 3:10,185,507-10,186,718 | + | C1H3g07890 | C2H3g08312 | LOC_Os03g20230 | Os03g0317900 | - | Detail |
| CX3g028957 | 3:10,193,759-10,195,053 | + | C1H3g20479 | C2H3g29183 | LOC_Os03g20290 | Os03g0318400 | - | Detail |
| CX3g024974 | 3:10,196,697-10,202,396 | - | C1H3g31254 | C2H3g10315 | LOC_Os03g20300 | Os03g0318500 | - | Detail |
| CX3g025701 | 3:10,203,208-10,207,040 | - | C1H3g27797 | C2H3g15586 | LOC_Os03g20310 | Os03g0318600 | OsTGA3 | Detail |