| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g02659 | 2:21,650,013-21,652,314 | + | C1H2g31252 | CX2g021015 | LOC_Os02g38040 | Os02g0593600 | OsIRL2 | Detail |
| C2H2g02107 | 2:21,652,904-21,658,629 | - | C1H2g28738 | CX2g022113 | LOC_Os02g38050 | Os02g0593700 | - | Detail |
| C2H2g27414 | 2:21,662,462-21,666,899 | + | C1H2g05228 | CX2g022962 | LOC_Os02g38060 | Os02g0593900 | - | Detail |
| C2H2g28617 | 2:21,671,276-21,676,533 | + | C1H2g19613 | CX2g020918 | LOC_Os02g38080 | Os02g0594100 | - | Detail |
| C2H2g22920 | 2:21,706,647-21,709,519 | + | C1H2g26025 | CX2g022653 | LOC_Os02g38120 | Os02g0594700 | OsBTBN3 | Detail |
| C2H2g27568 | 2:21,725,819-21,728,861 | - | C1H2g03331 | CX2g023488 | LOC_Os02g38130 | Os02g0594800 | An-4, OsSGL | Detail |
| C2H2g08333 | 2:21,734,849-21,737,047 | - | C1H2g12247 | CX2g020733 | LOC_Os02g38160 | Os02g0594900 | - | Detail |
| C2H2g24282 | 2:21,748,043-21,751,282 | - | C1H2g09203 | CX2g024257 | LOC_Os02g38160 | Os02g0595100 | - | Detail |
| C2H2g12684 | 2:21,768,658-21,769,571 | - | C1H2g18043 | CX2g021227 | LOC_Os02g38180 | Os02g0595300 | - | Detail |
| C2H2g27779 | 2:21,773,593-21,777,440 | - | C1H2g28766 | CX2g023998 | LOC_Os02g38200 | Os02g0595500 | - | Detail |
| C2H2g13918 | 2:21,783,398-21,787,026 | + | C1H2g15529 | CX2g023123 | LOC_Os02g38220 | Os02g0595800 | - | Detail |
| C2H2g12990 | 2:21,788,231-21,789,893 | - | C1H2g13753 | CX2g024625 | LOC_Os02g38230 | Os02g0595900 | NAR2.1, OsNAR2.1, OsNRT3.1A | Detail |
| C2H2g05640 | 2:21,794,766-21,797,513 | - | C1H2g12816 | CX2g021096 | LOC_Os02g38240 | Os02g0596000 | - | Detail |
| C2H2g05424 | 2:21,799,545-21,808,652 | - | C1H2g21293 | CX2g020732 | LOC_Os02g38250 | Os02g0596100 | - | Detail |
| C2H2g17152 | 2:21,810,292-21,812,161 | + | C1H2g16769 | CX2g020902 | LOC_Os02g38260 | Os02g0596200 | LSSR1 | Detail |
| C2H2g16801 | 2:21,813,661-21,815,350 | - | C1H2g16904 | - | - | - | - | Detail |
| C2H2g06504 | 2:21,815,761-21,817,377 | - | C1H2g00956 | CX2g024363 | LOC_Os02g38290 | Os02g0596300 | CYP94E1, OsCYP94E1 | Detail |
| C2H2g01473 | 2:21,820,091-21,820,710 | - | - | - | - | - | - | Detail |
| C2H2g22627 | 2:21,823,310-21,826,480 | - | C1H2g15841 | CX2g024642 | LOC_Os02g38300 | Os02g0596500 | - | Detail |
| C2H2g25090 | 2:21,827,821-21,828,330 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g031316 | 3:9,732,596-9,739,471 | - | C1H3g00240 | C2H3g03655 | LOC_Os03g19480 | Os03g0307800 | IEZ1, OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718 | Detail |
| CX3g025615 | 3:9,741,132-9,741,661 | + | C1H3g04726 | C2H3g06844 | LOC_Os03g13830 | Os03g0307900 | - | Detail |
| CX3g024948 | 3:9,742,890-9,745,363 | + | C1H3g19730 | C2H3g23976 | LOC_Os03g19500 | Os03g0308000 | SMG3 | Detail |
| CX3g029346 | 3:9,746,959-9,749,596 | - | C1H3g14154 | C2H3g08220 | LOC_Os03g19510 | Os03g0308100 | - | Detail |
| CX3g025603 | 3:9,751,021-9,757,592 | - | C1H3g03825 | C2H3g05621 | LOC_Os03g19520 | Os03g0308200 | - | Detail |
| CX3g029899 | 3:9,761,839-9,765,652 | + | C1H3g14624 | C2H3g16168 | LOC_Os03g19530 | Os03g0308500 | - | Detail |
| CX3g026525 | 3:9,766,690-9,768,851 | + | - | C2H3g16168 | LOC_Os08g23280 | - | - | Detail |
| CX3g025445 | 3:9,771,423-9,773,023 | + | C1H3g01414 | C2H3g07392 | LOC_Os03g19550 | Os03g0308700 | - | Detail |
| CX3g030908 | 3:9,773,807-9,778,694 | - | C1H3g19377 | C2H3g00056 | LOC_Os03g19560 | Os03g0308800 | - | Detail |
| CX3g028131 | 3:9,779,936-9,787,837 | - | C1H3g11990 | C2H3g29613 | LOC_Os03g19570 | Os03g0308900 | - | Detail |
| CX3g027111 | 3:9,789,105-9,793,300 | - | C1H3g12362 | C2H3g04332 | LOC_Os03g19580 | Os03g0309000 | - | Detail |
| CX3g027710 | 3:9,801,426-9,808,862 | + | C1H3g01579 | C2H3g27208 | LOC_Os03g19590 | Os03g0309200 | PHYB, phyB | Detail |
| CX3g030356 | 3:9,818,109-9,818,333 | - | - | - | - | Os03g0309250 | - | Detail |
| CX3g026554 | 3:9,820,751-9,822,354 | - | C1H3g14051 | C2H3g16987 | LOC_Os03g19610 | Os03g0309400 | OsPME1 | Detail |
| CX3g025824 | 3:9,824,455-9,824,955 | - | C1H3g10254 | C2H3g05143 | LOC_Os03g19630 | Os03g0309600 | Os2R_MYB35 | Detail |
| CX3g028766 | 3:9,859,254-9,859,475 | + | C1H3g11555 | C2H3g16697 | - | - | - | Detail |
| CX3g028595 | 3:9,861,357-9,863,424 | + | C1H3g27332 | C2H3g12766 | LOC_Os03g19650 | Os03g0309800 | - | Detail |
| CX3g031099 | 3:9,868,879-9,869,373 | + | - | - | - | - | - | Detail |
| CX3g030795 | 3:9,872,568-9,874,521 | + | C1H3g10972 | C2H3g11631 | LOC_Os03g19670 | Os03g0310000 | - | Detail |
| CX3g026374 | 3:9,877,544-9,879,324 | + | C1H3g01286 | C2H3g08022 | LOC_Os03g19680 | Os03g0310400 | - | Detail |