| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g10192 | 1:37,983,384-37,983,758 | - | C2H1g13361 | CX1g001721 | LOC_Os01g62605 | Os01g0525350 | - | Detail |
| C1H1g22544 | 1:38,012,853-38,014,658 | + | C2H1g11458 | CX1g004641 | LOC_Os01g74140 | Os01g0972800 | - | Detail |
| C1H1g11871 | 1:38,015,604-38,018,377 | + | C2H1g01506 | CX1g002412 | LOC_Os01g74146 | Os01g0972900 | - | Detail |
| C1H1g20094 | 1:38,020,128-38,022,349 | + | C2H1g06809 | CX1g001376 | LOC_Os01g74152 | Os01g0973000 | - | Detail |
| C1H1g13166 | 1:38,026,253-38,034,717 | + | C2H1g13614 | CX1g005552 | LOC_Os01g74160 | Os01g0973100 | - | Detail |
| C1H1g06879 | 1:38,043,466-38,048,873 | + | C2H1g13614 | CX1g006692 | LOC_Os01g74160 | Os01g0973100 | - | Detail |
| C1H1g09462 | 1:38,060,707-38,062,257 | + | C2H1g12274 | CX1g006692 | LOC_Os01g74160 | Os01g0973100 | - | Detail |
| C1H1g08383 | 1:38,063,641-38,066,390 | - | C2H1g11159 | CX1g005022 | LOC_Os01g74170 | Os01g0973200 | - | Detail |
| C1H1g08747 | 1:38,066,630-38,073,123 | + | C2H1g11244 | CX1g001253 | LOC_Os01g74180 | Os01g0973300 | - | Detail |
| C1H1g24365 | 1:38,073,391-38,076,022 | - | C2H1g02312 | CX1g006642 | LOC_Os01g74190 | Os01g0973400 | - | Detail |
| C1H1g04847 | 1:38,077,455-38,078,176 | - | C2H1g19031 | CX1g001727 | - | - | - | Detail |
| C1H1g17179 | 1:38,078,466-38,082,153 | - | C2H1g00069 | CX1g005214 | LOC_Os01g74200 | Os01g0973500 | OsRLCK57 | Detail |
| C1H1g03340 | 1:38,089,922-38,091,626 | + | C2H1g03909 | CX1g000931 | LOC_Os01g74250 | Os01g0973600 | - | Detail |
| C1H1g14171 | 1:38,097,322-38,101,289 | + | C2H1g15614 | CX1g005461 | LOC_Os01g74280 | Os01g0974000 | - | Detail |
| C1H1g17283 | 1:38,101,504-38,103,123 | + | C2H1g21525 | CX1g000461 | LOC_Os05g02060 | Os01g0974100 | - | Detail |
| C1H1g22123 | 1:38,104,483-38,105,148 | + | C2H1g15720 | CX1g006877 | LOC_Os01g74300 | Os01g0974200 | - | Detail |
| C1H1g01783 | 1:38,106,016-38,115,484 | - | C2H1g08301 | CX1g005460 | LOC_Os01g74310 | Os01g0974300 | - | Detail |
| C1H1g11378 | 1:38,123,392-38,124,753 | + | C2H1g06537 | CX1g003643 | LOC_Os01g74320 | Os01g0974400 | - | Detail |
| C1H1g11600 | 1:38,126,428-38,129,695 | - | C2H1g18112 | CX1g002940 | LOC_Os01g74330 | Os01g0974500 | - | Detail |
| C1H1g07020 | 1:38,130,338-38,132,470 | + | C2H1g17646 | CX1g006503 | LOC_Os01g74340 | Os01g0974701 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g028201 | 3:9,617,348-9,618,220 | - | C1H3g18796 | C2H3g28502 | LOC_Os03g19270 | Os03g0305400 | OsUSP3 | Detail |
| CX3g030535 | 3:9,618,993-9,625,042 | + | C1H3g22639 | C2H3g12913 | LOC_Os03g19280 | Os03g0305500 | ASL1, OsASL1.2, OsASL1, OsAL1, red1 | Detail |
| CX3g026875 | 3:9,625,774-9,626,136 | - | - | - | - | Os03g0305550 | - | Detail |
| CX3g026844 | 3:9,626,221-9,627,361 | + | C1H3g06291 | C2H3g24123 | LOC_Os03g19290 | Os03g0305600 | - | Detail |
| CX3g029447 | 3:9,628,306-9,631,055 | + | C1H3g09918 | C2H3g29234 | LOC_Os03g19300 | Os03g0305700 | - | Detail |
| CX3g025751 | 3:9,631,773-9,633,224 | - | C1H3g15276 | C2H3g25404 | LOC_Os03g19310 | Os03g0305800 | - | Detail |
| CX3g029664 | 3:9,644,621-9,645,970 | + | C1H3g04998 | C2H3g04492 | LOC_Os03g19330 | Os03g0306100 | - | Detail |
| CX3g028723 | 3:9,646,811-9,664,007 | - | C1H3g22410 | C2H3g27650 | LOC_Os03g19340 | Os03g0306200 | - | Detail |
| CX3g027549 | 3:9,666,552-9,677,738 | - | C1H3g02755 | C2H3g07435 | LOC_Os03g19350 | Os03g0306400 | - | Detail |
| CX3g026074 | 3:9,686,358-9,686,879 | + | C1H3g18574 | C2H3g20582 | LOC_Os03g19370 | Os03g0239400 | - | Detail |
| CX3g027392 | 3:9,690,199-9,690,585 | + | C1H3g08148 | C2H3g07871 | LOC_Os03g19380 | Os03g0306800 | - | Detail |
| CX3g025960 | 3:9,691,238-9,693,331 | - | C1H3g23949 | C2H3g26352 | LOC_Os03g19390 | Os03g0306900 | - | Detail |
| CX3g025770 | 3:9,693,526-9,695,419 | + | C1H3g18672 | C2H3g08753 | LOC_Os03g19400 | Os03g0307000 | - | Detail |
| CX3g025641 | 3:9,697,411-9,704,107 | + | C1H3g26919 | C2H3g28158 | LOC_Os03g19410 | Os03g0307100 | - | Detail |
| CX3g028955 | 3:9,706,391-9,707,422 | + | C1H3g07326 | C2H3g27859 | LOC_Os03g19427 | Os03g0307300 | - | Detail |
| CX3g027893 | 3:9,711,701-9,712,696 | - | C1H3g08713 | C2H3g23633 | LOC_Os03g19420 | Os03g0307200 | NAS2, OsNAS2 | Detail |
| CX3g027748 | 3:9,719,247-9,719,741 | + | C1H3g12875 | C2H3g12347 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| CX3g025182 | 3:9,721,987-9,723,195 | + | C1H3g10945 | C2H3g00214 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| CX3g028724 | 3:9,723,610-9,726,883 | + | C1H3g01117 | C2H3g27228 | LOC_Os03g19462 | - | - | Detail |
| CX3g026010 | 3:9,729,669-9,731,960 | + | C1H3g07984 | C2H3g27622 | LOC_Os03g19470 | Os03g0307700 | - | Detail |