| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g26116 | 1:27,134,538-27,137,366 | - | C1H1g10786 | CX1g004596 | - | - | - | Detail |
| C2H1g28261 | 1:27,142,183-27,146,094 | + | C1H1g07765 | CX1g004752 | LOC_Os01g53000 | Os01g0730300 | - | Detail |
| C2H1g16061 | 1:27,152,562-27,154,773 | + | C1H1g14431 | CX1g000426 | LOC_Os01g53020 | Os01g0730500 | - | Detail |
| C2H1g14164 | 1:27,155,252-27,155,722 | - | C1H1g06535 | CX1g000294 | LOC_Os01g53030 | Os01g0730600 | - | Detail |
| C2H1g07251 | 1:27,159,877-27,164,278 | - | - | - | - | - | - | Detail |
| C2H1g00487 | 1:27,165,973-27,167,070 | - | C1H1g09914 | CX1g001404 | LOC_Os01g53040 | Os01g0730700 | OsWRKY14 | Detail |
| C2H1g11513 | 1:27,172,515-27,178,459 | + | C1H1g06745 | CX1g000168 | LOC_Os01g53060 | Os01g0730800 | - | Detail |
| C2H1g14311 | 1:27,175,094-27,182,365 | - | C1H1g24583 | CX1g001666 | LOC_Os01g53070 | Os01g0730900 | - | Detail |
| C2H1g06139 | 1:27,187,784-27,192,946 | - | C1H1g26539 | CX1g001800 | LOC_Os01g53079 | Os01g0731000 | - | Detail |
| C2H1g15826 | 1:27,193,168-27,196,635 | + | - | - | LOC_Os01g52840 | - | - | Detail |
| C2H1g09687 | 1:27,201,151-27,202,174 | - | C1H1g09554 | - | LOC_Os01g53090 | Os01g0731100 | - | Detail |
| C2H1g22498 | 1:27,209,193-27,210,171 | - | C1H1g09554 | - | LOC_Os01g53090 | Os01g0731100 | - | Detail |
| C2H1g25202 | 1:27,213,665-27,216,703 | - | C1H1g05462 | CX1g002698 | LOC_Os01g53130 | Os01g0731800 | - | Detail |
| C2H1g12212 | 1:27,221,578-27,221,790 | - | C1H1g13195 | CX1g002007 | - | Os01g0732000 | - | Detail |
| C2H1g12385 | 1:27,222,104-27,222,343 | + | C1H1g19403 | CX1g005912 | LOC_Os01g53140 | Os01g0750800 | - | Detail |
| C2H1g09330 | 1:27,225,810-27,230,209 | + | C1H1g18233 | CX1g006701 | LOC_Os01g53150 | Os01g0732200 | - | Detail |
| C2H1g23680 | 1:27,238,889-27,250,648 | + | C1H1g17097 | CX1g000356 | LOC_Os01g53200 | Os01g0732700 | YUCCA3, OsYUCCA3 | Detail |
| C2H1g25806 | 1:27,253,877-27,254,203 | - | C1H1g06233 | CX1g002859 | - | - | - | Detail |
| C2H1g04447 | 1:27,260,739-27,261,589 | + | C1H1g02415 | CX1g003483 | LOC_Os01g53220 | Os01g0733200 | OsHsfC1b | Detail |
| C2H1g19099 | 1:27,264,408-27,268,847 | - | C1H1g21238 | CX1g006706 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030728 | 3:8,686,675-8,690,856 | - | C1H3g02152 | C2H3g30073 | LOC_Os03g17590 | Os03g0284500 | - | Detail |
| CX3g026963 | 3:8,691,035-8,694,013 | + | C1H3g05023 | C2H3g08600 | LOC_Os03g17600 | Os03g0284600 | - | Detail |
| CX3g025121 | 3:8,698,162-8,699,567 | + | C1H3g06994 | C2H3g03614 | - | Os03g0284650 | - | Detail |
| CX3g025050 | 3:8,700,796-8,702,121 | + | C1H3g21431 | C2H3g12259 | LOC_Os03g17610 | Os03g0284800 | TOP6A3 | Detail |
| CX3g026635 | 3:8,704,508-8,712,751 | - | C1H3g26561 | C2H3g11357 | LOC_Os03g17634 | Os03g0284900 | - | Detail |
| CX3g031354 | 3:8,713,522-8,715,849 | + | C1H3g30930 | C2H3g28206 | LOC_Os03g17660 | Os03g0285100 | - | Detail |
| CX3g026969 | 3:8,718,332-8,718,559 | + | C1H3g11566 | C2H3g03876 | LOC_Os03g17670 | Os03g0285200 | - | Detail |
| CX3g026553 | 3:8,737,933-8,740,989 | + | C1H3g07669 | C2H3g06105 | LOC_Os03g17690 | Os03g0285700 | OsAPXa, OsAPX1 | Detail |
| CX3g029338 | 3:8,742,856-8,745,136 | - | C1H3g30823 | C2H3g17399 | LOC_Os03g17700 | Os03g0285800 | - | Detail |
| CX3g029635 | 3:8,748,060-8,751,185 | - | C1H3g12993 | C2H3g05165 | LOC_Os03g17710 | Os03g0285900 | OsRS2Z38 | Detail |
| CX3g025186 | 3:8,754,741-8,757,954 | + | C1H3g05382 | C2H3g24206 | LOC_Os03g17730 | Os03g0286200 | - | Detail |
| CX3g029393 | 3:8,763,316-8,767,273 | + | C1H3g30819 | C2H3g05135 | LOC_Os03g17740 | Os03g0286300 | - | Detail |
| CX3g028814 | 3:8,769,500-8,771,721 | - | C1H3g23357 | C2H3g11924 | LOC_Os03g17760 | Os03g0286500 | - | Detail |
| CX3g028365 | 3:8,780,574-8,783,306 | + | C1H3g16747 | C2H3g28874 | LOC_Os03g17780 | Os03g0286800 | - | Detail |
| CX3g026690 | 3:8,784,865-8,785,151 | - | C1H3g27086 | C2H3g08715 | LOC_Os03g17790 | Os03g0286900 | OsRCI2-5 | Detail |
| CX3g030677 | 3:8,788,330-8,790,269 | - | C1H3g29184 | C2H3g22847 | LOC_Os03g17800 | Os03g0287100 | OsPITPα, OsPITPalpha | Detail |
| CX3g026247 | 3:8,797,790-8,798,608 | - | C1H3g05095 | C2H3g20359 | LOC_Os03g17810 | Os03g0287400 | - | Detail |
| CX3g029968 | 3:8,813,185-8,818,215 | + | C1H3g02097 | C2H3g27675 | LOC_Os03g17840 | Os03g0287700 | - | Detail |
| CX3g025194 | 3:8,824,194-8,827,861 | + | C1H3g16177 | C2H3g09757 | LOC_Os03g17850 | Os03g0287800 | OsGT43B | Detail |
| CX3g027864 | 3:8,830,387-8,832,403 | - | C1H3g12393 | C2H3g14774 | LOC_Os03g17860 | Os03g0287900 | - | Detail |