| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g08054 | 1:11,910,663-11,910,941 | - | - | - | - | - | - | Detail |
| C1H1g27403 | 1:12,135,209-12,135,649 | - | - | - | - | - | - | Detail |
| C1H1g10156 | 1:12,272,894-12,275,880 | - | - | CX1g002107 | - | - | - | Detail |
| C1H1g05806 | 1:12,275,832-12,278,591 | + | - | - | - | - | - | Detail |
| C1H1g13768 | 1:12,397,829-12,398,927 | + | C2H1g13415 | CX1g001811 | - | Os01g0527900 | - | Detail |
| C1H1g21970 | 1:12,413,074-12,416,799 | + | C2H1g07465 | CX1g002117 | LOC_Os01g24420 | Os01g0346250 | - | Detail |
| C1H1g27382 | 1:12,449,995-12,454,416 | + | C2H1g25406 | CX1g002994 | LOC_Os01g24470 | Os01g0347000 | - | Detail |
| C1H1g08071 | 1:12,454,905-12,459,336 | - | C2H1g02246 | CX1g000129 | LOC_Os01g24480 | Os01g0347100 | - | Detail |
| C1H1g27053 | 1:12,464,219-12,465,938 | - | C2H1g19331 | CX1g002181 | LOC_Os01g24490 | Os01g0347200 | - | Detail |
| C1H1g27449 | 1:12,471,501-12,473,416 | + | C2H1g13817 | CX1g006871 | LOC_Os01g24500 | Os01g0347300 | - | Detail |
| C1H1g19455 | 1:12,480,165-12,481,331 | - | C2H1g00502 | CX1g004946 | LOC_Os01g24600 | Os01g0347500 | - | Detail |
| C1H1g17773 | 1:12,499,393-12,502,269 | - | - | - | - | - | - | Detail |
| C1H1g19481 | 1:12,503,419-12,504,535 | - | C2H1g29017 | CX1g002830 | LOC_Os01g24570 | Os01g0347600 | - | Detail |
| C1H1g09482 | 1:12,507,644-12,508,819 | + | C2H1g00502 | CX1g001042 | LOC_Os01g24600 | Os01g0347500 | - | Detail |
| C1H1g02190 | 1:12,525,299-12,531,293 | + | C2H1g02997 | CX1g000047 | LOC_Os01g24680 | Os01g0348600 | - | Detail |
| C1H1g22060 | 1:12,533,972-12,535,588 | + | C2H1g13094 | CX1g006528 | LOC_Os01g24690 | Os01g0348700 | - | Detail |
| C1H1g28108 | 1:12,538,033-12,540,129 | - | C2H1g24178 | CX1g002294 | LOC_Os01g25280 | Os01g0348800 | - | Detail |
| C1H1g00208 | 1:12,541,678-12,542,212 | - | C2H1g30396 | CX1g002294 | LOC_Os01g24710 | Os01g0348900 | OsJRL, OsMBL1, OsSalt | Detail |
| C1H1g16274 | 1:12,559,226-12,564,177 | - | C2H1g24096 | CX1g004857 | LOC_Os01g24750 | Os01g0349400 | - | Detail |
| C1H1g27046 | 1:12,577,706-12,580,849 | + | C2H1g13316 | CX1g000662 | LOC_Os01g24780 | Os01g0349800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g027101 | 3:8,542,808-8,545,171 | + | C1H3g04312 | C2H3g02883 | LOC_Os03g17350 | Os03g0281900 | ABCG5, OsABCG5, RCN1/OsABCG5 | Detail |
| CX3g025177 | 3:8,550,456-8,552,756 | + | C1H3g07058 | C2H3g04384 | LOC_Os03g17370 | Os03g0281900 | ABCG5, OsABCG5, RCN1/OsABCG5 | Detail |
| CX3g026382 | 3:8,561,353-8,565,309 | - | C1H3g16432 | - | LOC_Os03g17410 | Os03g0282232 | - | Detail |
| CX3g029559 | 3:8,578,177-8,580,260 | - | C1H11g04596 | - | LOC_Os03g17110 | Os03g0643050 | - | Detail |
| CX3g027572 | 3:8,584,974-8,586,191 | + | C1H3g15208 | C2H3g12675 | LOC_Os03g17432 | Os03g0282700 | - | Detail |
| CX3g026586 | 3:8,586,573-8,589,077 | - | C1H3g13015 | C2H3g17220 | LOC_Os03g17440 | Os03g0282800 | - | Detail |
| CX3g027144 | 3:8,589,606-8,592,482 | + | C1H3g25350 | C2H3g11550 | LOC_Os03g17450 | Os03g0282900 | - | Detail |
| CX3g030233 | 3:8,601,331-8,609,003 | - | C1H3g15668 | C2H3g23509 | LOC_Os03g08400 | Os03g0855700 | - | Detail |
| CX3g025910 | 3:8,610,791-8,611,117 | + | - | - | LOC_Os03g10280 | - | - | Detail |
| CX3g025299 | 3:8,615,902-8,618,567 | + | C1H3g04825 | C2H3g16412 | LOC_Os03g17490 | Os03g0283300 | - | Detail |
| CX3g029292 | 3:8,619,425-8,621,694 | - | C1H3g31389 | C2H3g25427 | LOC_Os03g17500 | Os03g0283400 | - | Detail |
| CX3g030457 | 3:8,625,315-8,627,111 | - | C1H3g29978 | C2H3g26100 | LOC_Os03g17510 | Os03g0283500 | - | Detail |
| CX3g030456 | 3:8,627,875-8,631,687 | - | C1H3g13527 | C2H3g10500 | LOC_Os03g17520 | Os03g0283600 | - | Detail |
| CX3g031290 | 3:8,635,384-8,635,833 | - | - | - | - | Os03g0283750 | - | Detail |
| CX3g026672 | 3:8,636,387-8,642,427 | + | C1H3g19722 | C2H3g23371 | LOC_Os03g17540 | Os03g0283800 | - | Detail |
| CX3g029803 | 3:8,643,870-8,647,244 | - | C1H3g11797 | C2H3g29700 | LOC_Os03g17550 | Os03g0283900 | - | Detail |
| CX3g025210 | 3:8,648,315-8,650,375 | + | C1H3g07283 | C2H3g23379 | LOC_Os03g17560 | Os03g0284000 | - | Detail |
| CX3g025348 | 3:8,651,570-8,659,425 | - | C1H3g27931 | C2H3g10813 | LOC_Os03g17570 | Os03g0284100 | OsPRR73, OsCCT11 | Detail |
| CX3g026952 | 3:8,684,398-8,685,066 | - | C1H3g12560 | C2H3g28337 | LOC_Os03g17580 | Os03g0284400 | - | Detail |
| CX3g028561 | 3:8,685,548-8,685,817 | + | - | - | - | - | - | Detail |