| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g10513 | 2:3,627,729-3,641,029 | - | C2H2g16155 | CX2g023980 | LOC_Os02g08010 | Os02g0176700 | OsACA9 | Detail |
| C1H2g25148 | 2:3,655,457-3,658,188 | - | C2H2g22723 | CX2g022339 | LOC_Os02g08030 | Os02g0176900 | - | Detail |
| C1H2g16100 | 2:3,675,161-3,678,689 | + | C2H2g01390 | CX2g022848 | LOC_Os02g08070 | Os02g0177300 | - | Detail |
| C1H2g15920 | 2:3,688,213-3,692,183 | - | C2H2g10970 | CX2g024774 | LOC_Os02g08080 | Os02g0177400 | - | Detail |
| C1H2g27198 | 2:3,693,389-3,695,014 | - | C2H2g24704 | CX2g020793 | LOC_Os02g08090 | Os02g0177500 | - | Detail |
| C1H2g08951 | 2:3,702,511-3,707,829 | + | C2H2g12631 | CX2g022957 | LOC_Os02g08100 | Os02g0177600 | 4CL3, Os4CL3 | Detail |
| C1H2g09011 | 2:3,709,197-3,710,984 | - | C2H2g27738 | CX2g022286 | LOC_Os02g08110 | Os02g0177700 | - | Detail |
| C1H2g27287 | 2:3,719,476-3,725,246 | - | C2H2g12927 | CX2g022124 | LOC_Os02g08120 | Os02g0177800 | - | Detail |
| C1H2g28459 | 2:3,728,441-3,733,246 | + | C2H2g07746 | CX2g019995 | LOC_Os02g08130 | Os02g0177900 | - | Detail |
| C1H2g30647 | 2:3,733,199-3,736,414 | - | C2H2g14463 | CX2g024854 | LOC_Os02g08140 | Os02g0178000 | - | Detail |
| C1H2g28373 | 2:3,742,231-3,743,496 | + | C2H2g17770 | CX2g023396 | LOC_Os02g08150 | Os02g0178100 | - | Detail |
| C1H2g21750 | 2:3,745,477-3,748,847 | + | C2H2g04824 | CX2g020766 | LOC_Os02g08160 | Os02g0178200 | - | Detail |
| C1H2g10276 | 2:3,753,302-3,753,910 | - | - | CX2g023860 | LOC_Os02g08170 | Os02g0191800 | - | Detail |
| C1H2g28628 | 2:3,759,285-3,761,367 | + | C2H2g23387 | CX2g023441 | LOC_Os02g08180 | Os02g0178400 | - | Detail |
| C1H2g01304 | 2:3,761,581-3,765,201 | - | C2H2g26582 | CX2g023345 | LOC_Os02g08190 | Os02g0178500 | - | Detail |
| C1H2g06394 | 2:3,768,804-3,769,322 | - | C2H2g18111 | CX2g022788 | LOC_Os02g08200 | Os02g0178600 | - | Detail |
| C1H2g21156 | 2:3,774,769-3,777,303 | + | C2H2g20296 | CX2g022199 | LOC_Os02g06310 | - | - | Detail |
| C1H2g04350 | 2:3,780,500-3,781,253 | + | C2H2g23988 | CX2g021716 | LOC_Os02g08220 | Os02g0178700 | OsbHLH157 | Detail |
| C1H2g14635 | 2:3,782,484-3,790,170 | - | C2H2g27041 | CX2g019198 | LOC_Os02g08230 | Os02g0178800 | OsGL1-2 | Detail |
| C1H2g16007 | 2:3,805,226-3,810,355 | + | C2H2g11136 | CX2g019069 | LOC_Os02g08240 | Os02g0179000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026985 | 3:8,376,008-8,376,259 | + | - | - | - | - | - | Detail |
| CX3g031018 | 3:8,376,878-8,380,691 | - | C1H3g01283 | C2H3g16393 | LOC_Os03g17120 | Os03g0279400 | - | Detail |
| CX3g028159 | 3:8,389,086-8,389,941 | - | C1H3g17646 | C2H3g23941 | LOC_Os03g17140 | Os03g0279600 | - | Detail |
| CX3g031350 | 3:8,391,127-8,391,481 | - | C1H3g18147 | C2H3g19846 | LOC_Os03g12940 | Os03g0782500 | PIL13, OsPIL1, OsPIL13, OsbHLH152 | Detail |
| CX3g030469 | 3:8,410,665-8,411,240 | - | C1H3g07955 | C2H3g05642 | LOC_Os03g17150 | Os03g0279700 | - | Detail |
| CX3g028650 | 3:8,424,580-8,432,815 | + | C1H3g10805 | C2H3g08725 | LOC_Os03g17164 | Os03g0279832 | - | Detail |
| CX3g030780 | 3:8,439,082-8,447,138 | - | C1H3g05773 | C2H3g05359 | LOC_Os03g17180 | Os03g0280000 | - | Detail |
| CX3g028917 | 3:8,464,527-8,464,865 | - | - | - | - | - | - | Detail |
| CX3g028994 | 3:8,474,710-8,480,909 | + | C1H3g22706 | C2H3g27265 | LOC_Os03g17210 | Os03g0280700 | - | Detail |
| CX3g029125 | 3:8,482,951-8,483,910 | + | C1H3g01230 | C2H3g20835 | LOC_Os03g17220 | Os03g0280750 | - | Detail |
| CX3g025025 | 3:8,484,411-8,486,943 | - | C1H3g29688 | C2H3g25701 | LOC_Os03g17230 | Os03g0280800 | OsUXS1 | Detail |
| CX3g031048 | 3:8,488,693-8,491,505 | + | C1H3g02805 | C2H3g19709 | LOC_Os03g17240 | Os03g0281000 | - | Detail |
| CX3g028226 | 3:8,494,907-8,496,719 | + | C1H3g19384 | C2H3g01163 | LOC_Os03g17250 | Os03g0281100 | - | Detail |
| CX3g026165 | 3:8,501,318-8,502,262 | - | C1H3g05247 | C2H3g30239 | LOC_Os03g17260 | Os03g0281201 | - | Detail |
| CX3g025004 | 3:8,503,576-8,510,389 | - | C1H3g09869 | C2H3g10844 | LOC_Os03g17270 | Os03g0281300 | - | Detail |
| CX3g030681 | 3:8,513,332-8,514,048 | - | C1H3g20489 | C2H3g22572 | LOC_Os03g14100 | Os03g0378500 | Os2R_MYB37 | Detail |
| CX3g029052 | 3:8,514,383-8,514,868 | + | - | - | LOC_Os03g17280 | - | - | Detail |
| CX3g030928 | 3:8,521,476-8,523,995 | + | C1H3g05953 | C2H3g23238 | LOC_Os03g17300 | Os03g0281500 | OsCrRLK1L7 | Detail |
| CX3g030523 | 3:8,524,677-8,530,369 | - | C1H3g23808 | C2H3g13223 | LOC_Os03g17310 | Os03g0281600 | OsECA1 | Detail |
| CX3g026907 | 3:8,535,198-8,539,877 | - | C1H3g08368 | C2H3g28841 | LOC_Os03g17340 | Os03g0281800 | - | Detail |