| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g27090 | 3:850,028-850,639 | + | C2H3g30074 | CX3g029231 | LOC_Os03g05590 | Os03g0117900 | - | Detail |
| C1H3g15880 | 3:856,310-860,232 | + | C2H3g15234 | CX3g029442 | LOC_Os03g02660 | Os03g0118100 | - | Detail |
| C1H3g16233 | 3:862,627-865,949 | + | C2H3g07784 | CX3g026262 | LOC_Os03g02670 | Os03g0118200 | - | Detail |
| C1H3g13017 | 3:869,189-872,675 | + | C2H3g27804 | CX3g031203 | LOC_Os03g02680 | Os03g0118400 | - | Detail |
| C1H3g16154 | 3:874,883-875,251 | + | C2H3g24680 | CX3g030967 | LOC_Os03g02685 | Os10g0524300 | OsEMSA1 | Detail |
| C1H3g25055 | 3:876,822-879,754 | + | C2H3g24680 | CX3g030967 | LOC_Os03g02690 | Os03g0118600 | - | Detail |
| C1H3g29819 | 3:880,878-881,723 | + | C2H3g19778 | CX3g029478 | LOC_Os03g02700 | Os10g0524500 | NP1, OsNP1 | Detail |
| C1H3g15623 | 3:881,736-883,129 | + | C2H3g28799 | CX3g029478 | LOC_Os03g02700 | Os03g0118700 | - | Detail |
| C1H3g19576 | 3:891,227-896,308 | + | C2H3g12379 | CX3g027174 | LOC_Os03g02710 | Os03g0118800 | - | Detail |
| C1H3g18152 | 3:897,548-900,663 | + | C2H3g28095 | CX3g029720 | LOC_Os03g02720 | Os03g0118900 | - | Detail |
| C1H3g09297 | 3:901,082-904,667 | - | C2H3g05533 | CX3g029588 | LOC_Os03g02730 | Os03g0119000 | - | Detail |
| C1H3g07728 | 3:905,330-909,405 | - | C2H3g14532 | CX3g029171 | LOC_Os03g02740 | Os03g0119100 | - | Detail |
| C1H3g23288 | 3:912,695-914,947 | - | C2H3g09524 | CX3g030706 | LOC_Os03g02750 | Os03g0119300 | - | Detail |
| C1H3g00618 | 3:927,385-955,923 | + | C2H3g19502 | CX3g030646 | LOC_Os03g03610 | Os03g0119500 | CRR1 | Detail |
| C1H3g23255 | 3:956,674-957,933 | + | C2H3g11241 | CX3g025079 | LOC_Os03g02762 | Os03g0119700 | - | Detail |
| C1H3g13459 | 3:960,163-960,474 | + | C2H3g05811 | CX3g028433 | LOC_Os03g02780 | Os03g0119900 | - | Detail |
| C1H3g04574 | 3:969,029-972,980 | + | C2H3g00993 | CX3g026456 | LOC_Os03g02800 | Os03g0119966 | RIM1, ONAC054, ONAC54, NAC54 | Detail |
| C1H3g21463 | 3:974,336-977,534 | + | C2H3g24146 | - | LOC_Os03g02820 | Os03g0120000 | - | Detail |
| C1H3g16632 | 3:977,917-980,796 | - | C2H3g12012 | CX3g031103 | LOC_Os03g02830 | Os03g0120100 | - | Detail |
| C1H3g08934 | 3:982,340-986,225 | - | C2H3g14284 | CX3g026078 | LOC_Os03g02840 | Os03g0120200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025228 | 3:7,916,835-7,919,604 | - | C1H3g28190 | C2H3g30194 | LOC_Os03g16260 | Os03g0269300 | - | Detail |
| CX3g030432 | 3:7,925,550-7,927,940 | + | C1H3g05319 | C2H3g10990 | LOC_Os03g16290 | Os03g0269700 | OsSSR1 | Detail |
| CX3g028676 | 3:7,933,316-7,937,016 | + | C1H3g25495 | C2H3g12278 | LOC_Os03g16334 | Os03g0269900 | - | Detail |
| CX3g030836 | 3:7,942,831-7,943,607 | + | C1H3g15219 | C2H3g26039 | LOC_Os03g16350 | Os03g0270000 | OsAHL7 | Detail |
| CX3g029827 | 3:7,952,103-7,954,047 | - | - | - | LOC_Os03g16369 | Os03g0270200 | - | Detail |
| CX3g031331 | 3:7,954,282-7,954,710 | + | C1H3g05957 | C2H3g23864 | - | Os03g0270300 | - | Detail |
| CX3g029608 | 3:7,961,982-7,963,403 | - | C1H3g05634 | C2H3g17998 | LOC_Os03g16390 | Os03g0270500 | - | Detail |
| CX3g031120 | 3:7,968,237-7,968,470 | + | - | - | - | Os03g0270700 | - | Detail |
| CX3g031177 | 3:7,969,404-7,971,067 | + | C1H3g18450 | C2H3g10987 | LOC_Os03g16400 | Os01g0103800 | - | Detail |
| CX3g029680 | 3:7,971,824-7,972,297 | - | C1H3g20566 | C2H3g15886 | LOC_Os03g16410 | Os03g0270800 | - | Detail |
| CX3g026903 | 3:7,975,398-7,978,221 | + | C1H3g15183 | C2H3g30308 | LOC_Os03g16430 | Os03g0271100 | - | Detail |
| CX3g030405 | 3:7,979,114-7,984,069 | + | C1H3g23817 | C2H3g26882 | LOC_Os03g16440 | Os03g0271200 | - | Detail |
| CX3g027711 | 3:7,985,084-7,986,466 | + | C1H3g23484 | C2H3g19632 | LOC_Os03g16450 | Os03g0271300 | - | Detail |
| CX3g030348 | 3:7,986,969-7,991,100 | - | C1H3g07914 | C2H3g27304 | LOC_Os03g16460 | Os03g0271400 | - | Detail |
| CX3g027827 | 3:7,991,439-7,992,104 | + | C1H3g07286 | C2H3g08754 | LOC_Os03g16470 | Os03g0271500 | - | Detail |
| CX3g027903 | 3:7,995,857-7,996,696 | + | C1H3g24126 | C2H3g12514 | LOC_Os03g16480 | Os03g0271600 | - | Detail |
| CX3g028371 | 3:8,004,093-8,005,430 | + | C1H3g27178 | C2H3g28191 | LOC_Os03g16500 | Os03g0271900 | - | Detail |
| CX3g029063 | 3:8,009,362-8,012,130 | + | C1H3g08714 | C2H3g14243 | LOC_Os03g16570 | Os03g0272300 | OsSDIR1 | Detail |
| CX3g029825 | 3:8,014,649-8,019,336 | + | C1H3g26204 | C2H3g29860 | LOC_Os03g16580 | Os03g0272400 | - | Detail |
| CX3g025184 | 3:8,031,765-8,032,064 | - | C1H3g01466 | C2H3g08510 | LOC_Os03g16600 | Os03g0272900 | - | Detail |