| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g03290 | 3:12,842,350-12,842,710 | - | - | - | - | - | - | Detail |
| C2H3g10191 | 3:12,850,682-12,854,416 | + | C1H3g05126 | CX3g029883 | LOC_Os03g25400 | Os03g0370000 | - | Detail |
| C2H3g30681 | 3:12,856,860-12,861,072 | + | C1H7g09543 | CX3g025282 | LOC_Os03g25420 | Os03g0370200 | - | Detail |
| C2H3g01146 | 3:12,873,841-12,875,804 | - | C1H3g27086 | CX3g026690 | LOC_Os03g25460 | Os03g0370600 | - | Detail |
| C2H3g30283 | 3:12,879,327-12,879,884 | + | - | - | LOC_Os03g25470 | Os03g0370800 | - | Detail |
| C2H3g00547 | 3:12,880,237-12,883,385 | + | C1H3g23354 | CX3g031102 | LOC_Os03g25480 | Os03g0370900 | - | Detail |
| C2H3g19651 | 3:12,886,574-12,888,839 | + | C1H3g05051 | CX3g027113 | LOC_Os03g25490 | Os03g0371000 | - | Detail |
| C2H3g04381 | 3:12,895,170-12,900,255 | + | C1H3g00840 | CX3g027113 | LOC_Os03g25500 | Os03g0371300 | - | Detail |
| C2H3g15015 | 3:12,900,679-12,901,104 | + | C1H3g21806 | CX3g031102 | LOC_Os03g25490 | Os03g0370900 | - | Detail |
| C2H3g00617 | 3:12,916,267-12,917,663 | - | C1H3g16595 | CX3g030534 | LOC_Os03g25550 | Os03g0371800 | - | Detail |
| C2H3g13066 | 3:12,950,028-12,958,451 | + | C1H3g09237 | CX3g030141 | LOC_Os03g25600 | Os03g0821300 | - | Detail |
| C2H3g24461 | 3:12,960,944-12,961,547 | - | C1H3g20988 | CX3g030815 | LOC_Os03g25610 | Os03g0372600 | - | Detail |
| C2H3g09558 | 3:12,963,888-12,967,217 | + | C1H3g26671 | CX3g025086 | LOC_Os03g25620 | Os03g0372700 | - | Detail |
| C2H3g30423 | 3:12,991,252-12,995,111 | - | C1H3g02459 | CX3g029031 | LOC_Os03g25720 | Os03g0374100 | - | Detail |
| C2H3g09363 | 3:12,999,642-13,003,631 | + | C1H3g03430 | CX3g025872 | LOC_Os03g25750 | Os03g0374400 | - | Detail |
| C2H3g02420 | 3:13,004,759-13,007,289 | - | C1H3g29992 | CX3g031135 | LOC_Os03g25760 | Os03g0374500 | OsIQM3 | Detail |
| C2H3g06785 | 3:13,017,921-13,019,872 | - | C1H3g04281 | CX3g028239 | LOC_Os03g25770 | Os03g0374575 | OsSCL26 | Detail |
| C2H3g13807 | 3:13,024,500-13,029,718 | + | C1H3g12991 | CX3g025908 | LOC_Os03g25790 | Os03g0374600 | - | Detail |
| C2H3g07823 | 3:13,036,024-13,036,503 | - | C1H3g11329 | CX3g031122 | LOC_Os03g25820 | Os03g0375900 | - | Detail |
| C2H3g01665 | 3:13,043,224-13,043,499 | + | - | - | LOC_Os03g25830 | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g028948 | 3:7,550,581-7,553,712 | + | C1H3g00077 | C2H3g12029 | LOC_Os03g15550 | Os03g0262000 | - | Detail |
| CX3g029180 | 3:7,559,181-7,562,049 | + | C1H3g09649 | C2H3g02245 | LOC_Os03g15560 | Os03g0262100 | - | Detail |
| CX3g026565 | 3:7,563,897-7,567,543 | - | C1H3g05616 | C2H3g27971 | LOC_Os03g15570 | Os03g0262200 | - | Detail |
| CX3g027558 | 3:7,571,923-7,585,692 | - | C1H3g16946 | C2H3g16143 | LOC_Os03g15580 | Os03g0262300 | - | Detail |
| CX3g026755 | 3:7,587,893-7,590,410 | - | C1H3g00248 | C2H3g26303 | LOC_Os03g15590 | Os03g0262400 | - | Detail |
| CX3g027849 | 3:7,593,592-7,594,082 | - | C1H3g31150 | - | LOC_Os03g15110 | - | - | Detail |
| CX3g029077 | 3:7,598,282-7,599,087 | + | C1H3g17162 | C2H3g04568 | LOC_Os03g15630 | Os03g0262700 | - | Detail |
| CX3g031108 | 3:7,603,938-7,608,621 | + | C1H3g28720 | C2H3g27525 | LOC_Os03g15650 | Os03g0262900 | GLUP6/GEF, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6 | Detail |
| CX3g028305 | 3:7,610,487-7,611,248 | - | C1H3g05394 | C2H3g13896 | LOC_Os03g15660 | Os03g0263000 | - | Detail |
| CX3g027760 | 3:7,629,312-7,631,060 | + | C1H3g03212 | C2H3g08920 | LOC_Os03g15680 | Os03g0263300 | NSP2, Os NSP2, NSP2 | Detail |
| CX3g028003 | 3:7,634,161-7,637,775 | + | C1H3g04873 | C2H3g28518 | LOC_Os03g15690 | Os03g0263400 | - | Detail |
| CX3g030022 | 3:7,638,566-7,641,021 | - | C1H3g22836 | C2H3g08217 | LOC_Os03g15700 | Os03g0263500 | - | Detail |
| CX3g031268 | 3:7,642,586-7,644,165 | - | C1H3g14620 | C2H3g20978 | LOC_Os03g15710 | Os03g0263600 | OsSTRL2 | Detail |
| CX3g028260 | 3:7,645,899-7,648,978 | + | C1H3g20320 | C2H3g30231 | LOC_Os03g15720 | Os03g0263700 | - | Detail |
| CX3g027745 | 3:7,651,349-7,654,002 | + | C1H3g15450 | C2H3g12908 | LOC_Os03g15730 | Os03g0263800 | - | Detail |
| CX3g026739 | 3:7,657,245-7,659,791 | + | C1H3g29175 | C2H3g16128 | LOC_Os03g15740 | Os03g0263900 | - | Detail |
| CX3g027842 | 3:7,662,413-7,665,500 | - | C1H3g24070 | C2H3g07359 | LOC_Os03g15750 | Os03g0264000 | - | Detail |
| CX3g030764 | 3:7,673,841-7,676,514 | + | C1H3g19617 | C2H3g24590 | LOC_Os03g15770 | Os03g0264300 | - | Detail |
| CX3g029488 | 3:7,678,076-7,682,154 | - | C1H3g02519 | C2H3g11898 | LOC_Os03g15780 | Os03g0264400 | - | Detail |
| CX3g027532 | 3:7,686,955-7,688,328 | - | C1H3g09016 | C2H3g27599 | LOC_Os03g15790 | Os03g0264600 | - | Detail |