| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g29871 | 5:8,459,655-8,460,486 | - | C2H5g06365 | CX5g038788 | - | - | - | Detail |
| C1H5g22297 | 5:8,460,128-8,461,011 | + | C2H5g07418 | CX5g040066 | LOC_Os05g18780 | - | - | Detail |
| C1H5g23740 | 5:8,462,941-8,464,518 | + | C2H5g07418 | CX5g038825 | LOC_Os05g18780 | Os05g0270500 | - | Detail |
| C1H5g05288 | 5:8,509,880-8,513,967 | + | C2H8g04421 | CX10g009598 | - | - | - | Detail |
| C1H5g07422 | 5:8,520,847-8,524,083 | + | C2H5g13254 | CX5g040763 | LOC_Os05g18770 | Os05g0270200 | OsSUN1 | Detail |
| C1H5g12896 | 5:8,526,925-8,530,245 | - | C2H5g22742 | CX5g038173 | LOC_Os05g18750 | Os05g0270000 | - | Detail |
| C1H5g04723 | 5:8,541,545-8,543,558 | - | C2H5g20813 | CX5g040818 | LOC_Os05g19150 | Os05g0273800 | - | Detail |
| C1H5g19633 | 5:8,561,249-8,562,663 | - | C2H4g29979 | CX4g032396 | - | - | - | Detail |
| C1H5g24613 | 5:8,566,947-8,575,810 | + | C2H5g23596 | CX5g037963 | LOC_Os05g19270 | Os05g0274200 | MSH2, OsMSH2 | Detail |
| C1H5g22471 | 5:8,578,996-8,584,614 | + | C2H5g05262 | CX5g038105 | LOC_Os05g19280 | Os05g0274300 | - | Detail |
| C1H5g09467 | 5:8,615,152-8,616,720 | + | C2H5g00274 | CX5g040495 | LOC_Os05g19370 | Os05g0274900 | - | Detail |
| C1H5g29936 | 5:8,617,414-8,618,676 | - | - | - | - | Os05g0274950 | - | Detail |
| C1H5g23375 | 5:8,618,802-8,621,186 | - | C2H5g21767 | CX5g040741 | LOC_Os05g19380 | Os05g0275000 | - | Detail |
| C1H5g00832 | 5:8,626,045-8,628,861 | - | C2H5g00793 | CX5g040347 | LOC_Os05g19390 | Os05g0275100 | OsPPR939 | Detail |
| C1H5g06892 | 5:8,632,541-8,637,656 | + | C2H5g02127 | CX5g039057 | LOC_Os05g19470 | - | - | Detail |
| C1H5g22556 | 5:8,638,486-8,644,753 | - | C2H5g11590 | - | LOC_Os05g19480 | Os05g0275700 | - | Detail |
| C1H5g03721 | 5:8,663,246-8,665,737 | + | C2H5g02832 | CX5g039415 | LOC_Os05g19500 | Os05g0276100 | OsCHX14 | Detail |
| C1H5g26241 | 5:8,669,247-8,670,507 | - | - | - | - | - | - | Detail |
| C1H5g26341 | 5:8,689,678-8,691,125 | - | C2H5g28905 | CX5g040110 | LOC_Os05g19570 | Os05g0276500 | OsEXPA3 | Detail |
| C1H5g09212 | 5:8,714,705-8,715,715 | - | C2H5g07930 | CX5g038660 | LOC_Os05g19600 | Os05g0277000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g028948 | 3:7,550,581-7,553,712 | + | C1H3g00077 | C2H3g12029 | LOC_Os03g15550 | Os03g0262000 | - | Detail |
| CX3g029180 | 3:7,559,181-7,562,049 | + | C1H3g09649 | C2H3g02245 | LOC_Os03g15560 | Os03g0262100 | - | Detail |
| CX3g026565 | 3:7,563,897-7,567,543 | - | C1H3g05616 | C2H3g27971 | LOC_Os03g15570 | Os03g0262200 | - | Detail |
| CX3g027558 | 3:7,571,923-7,585,692 | - | C1H3g16946 | C2H3g16143 | LOC_Os03g15580 | Os03g0262300 | - | Detail |
| CX3g026755 | 3:7,587,893-7,590,410 | - | C1H3g00248 | C2H3g26303 | LOC_Os03g15590 | Os03g0262400 | - | Detail |
| CX3g027849 | 3:7,593,592-7,594,082 | - | C1H3g31150 | - | LOC_Os03g15110 | - | - | Detail |
| CX3g029077 | 3:7,598,282-7,599,087 | + | C1H3g17162 | C2H3g04568 | LOC_Os03g15630 | Os03g0262700 | - | Detail |
| CX3g031108 | 3:7,603,938-7,608,621 | + | C1H3g28720 | C2H3g27525 | LOC_Os03g15650 | Os03g0262900 | GLUP6/GEF, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6 | Detail |
| CX3g028305 | 3:7,610,487-7,611,248 | - | C1H3g05394 | C2H3g13896 | LOC_Os03g15660 | Os03g0263000 | - | Detail |
| CX3g027760 | 3:7,629,312-7,631,060 | + | C1H3g03212 | C2H3g08920 | LOC_Os03g15680 | Os03g0263300 | NSP2, Os NSP2, NSP2 | Detail |
| CX3g028003 | 3:7,634,161-7,637,775 | + | C1H3g04873 | C2H3g28518 | LOC_Os03g15690 | Os03g0263400 | - | Detail |
| CX3g030022 | 3:7,638,566-7,641,021 | - | C1H3g22836 | C2H3g08217 | LOC_Os03g15700 | Os03g0263500 | - | Detail |
| CX3g031268 | 3:7,642,586-7,644,165 | - | C1H3g14620 | C2H3g20978 | LOC_Os03g15710 | Os03g0263600 | OsSTRL2 | Detail |
| CX3g028260 | 3:7,645,899-7,648,978 | + | C1H3g20320 | C2H3g30231 | LOC_Os03g15720 | Os03g0263700 | - | Detail |
| CX3g027745 | 3:7,651,349-7,654,002 | + | C1H3g15450 | C2H3g12908 | LOC_Os03g15730 | Os03g0263800 | - | Detail |
| CX3g026739 | 3:7,657,245-7,659,791 | + | C1H3g29175 | C2H3g16128 | LOC_Os03g15740 | Os03g0263900 | - | Detail |
| CX3g027842 | 3:7,662,413-7,665,500 | - | C1H3g24070 | C2H3g07359 | LOC_Os03g15750 | Os03g0264000 | - | Detail |
| CX3g030764 | 3:7,673,841-7,676,514 | + | C1H3g19617 | C2H3g24590 | LOC_Os03g15770 | Os03g0264300 | - | Detail |
| CX3g029488 | 3:7,678,076-7,682,154 | - | C1H3g02519 | C2H3g11898 | LOC_Os03g15780 | Os03g0264400 | - | Detail |
| CX3g027532 | 3:7,686,955-7,688,328 | - | C1H3g09016 | C2H3g27599 | LOC_Os03g15790 | Os03g0264600 | - | Detail |