| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g30676 | 3:20,784,935-20,789,025 | + | C1H3g31743 | CX3g027969 | LOC_Os03g40540 | Os03g0602300 | OsBRD1, OsDWARF | Detail |
| C2H3g17661 | 3:20,794,087-20,799,178 | + | C1H3g17649 | CX3g026097 | LOC_Os03g40550 | Os03g0602600 | HSA1, OsFLN2, HSA1/OsFLN2 | Detail |
| C2H3g06081 | 3:20,802,911-20,808,131 | - | C1H3g14588 | CX3g026160 | LOC_Os03g40610 | Os03g0603100 | - | Detail |
| C2H3g09028 | 3:20,872,653-20,876,352 | + | C1H3g26758 | CX3g029684 | LOC_Os03g40670 | Os03g0603600 | - | Detail |
| C2H3g19200 | 3:20,924,799-20,925,579 | + | C1H3g15118 | CX3g029136 | - | Os03g0789600 | - | Detail |
| C2H3g23447 | 3:20,937,852-20,939,276 | + | C1H3g27392 | CX3g025313 | LOC_Os03g40770 | Os03g0604566 | - | Detail |
| C2H3g01476 | 3:20,940,772-20,946,213 | - | C1H3g29572 | CX3g029068 | LOC_Os03g40780 | Os03g0604600 | - | Detail |
| C2H3g29089 | 3:20,994,865-20,996,867 | - | C1H3g15527 | CX3g025804 | LOC_Os03g40930 | Os03g0606100 | - | Detail |
| C2H3g00163 | 3:21,042,269-21,044,985 | - | C1H3g29161 | CX3g025127 | LOC_Os03g41064 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| C2H3g26892 | 3:21,057,321-21,057,773 | - | C1H3g01431 | - | LOC_Os03g41050 | Os03g0607100 | - | Detail |
| C2H3g02928 | 3:21,058,798-21,059,152 | - | C1H3g01550 | CX3g027262 | LOC_Os03g41060 | Os03g0607200 | - | Detail |
| C2H3g23130 | 3:21,068,563-21,070,046 | - | C1H12g22810 | - | - | - | - | Detail |
| C2H3g22608 | 3:21,085,564-21,088,849 | - | C1H3g28561 | CX3g025127 | LOC_Os03g41070 | Os03g0607400 | - | Detail |
| C2H3g05599 | 3:21,090,319-21,095,973 | + | C1H3g18716 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C2H3g06432 | 3:21,097,436-21,097,702 | + | C1H3g08205 | CX3g026140 | - | - | - | Detail |
| C2H3g18057 | 3:21,100,668-21,115,704 | + | C1H3g15026 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C2H3g23306 | 3:21,116,126-21,117,088 | - | C1H3g16629 | CX3g027100 | - | Os03g0653900 | - | Detail |
| C2H3g00656 | 3:21,209,983-21,210,727 | + | - | - | - | - | - | Detail |
| C2H3g10659 | 3:21,214,357-21,222,145 | - | C1H3g05229 | CX3g025340 | - | Os03g0680100 | - | Detail |
| C2H3g06565 | 3:21,284,912-21,286,026 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026336 | 3:7,406,619-7,408,322 | + | C1H3g24652 | C2H3g23907 | LOC_Os03g15290 | Os03g0258500 | ATG6C, OsATG6c, OsATG6b | Detail |
| CX3g028133 | 3:7,417,716-7,419,407 | + | C1H3g15329 | C2H3g03473 | LOC_Os03g15320 | Os03g0258900 | - | Detail |
| CX3g029872 | 3:7,432,640-7,433,111 | + | C1H3g03982 | C2H3g20701 | LOC_Os03g15340 | Os03g0259100 | - | Detail |
| CX3g031115 | 3:7,434,049-7,440,702 | + | C1H3g01705 | C2H3g11980 | LOC_Os03g15350 | Os03g0259300 | - | Detail |
| CX3g028643 | 3:7,441,944-7,443,392 | - | C1H3g16374 | C2H3g23041 | LOC_Os03g15360 | Os03g0259400 | - | Detail |
| CX3g027649 | 3:7,447,030-7,448,934 | + | C1H3g08146 | C2H3g02482 | LOC_Os03g15380 | Os03g0259600 | - | Detail |
| CX3g025462 | 3:7,449,997-7,453,100 | - | C1H3g29794 | C2H3g06614 | LOC_Os03g15390 | Os03g0259700 | - | Detail |
| CX3g025456 | 3:7,453,737-7,453,913 | + | - | - | - | - | - | Detail |
| CX3g026758 | 3:7,458,660-7,461,638 | + | C1H3g00578 | C2H3g21664 | LOC_Os03g15410 | Os03g0259900 | - | Detail |
| CX3g026569 | 3:7,463,841-7,465,877 | + | C1H3g24107 | C2H3g30516 | LOC_Os03g15420 | Os03g0260000 | - | Detail |
| CX3g025990 | 3:7,466,634-7,470,970 | - | C1H3g10606 | C2H3g29512 | LOC_Os03g15430 | Os03g0260100 | - | Detail |
| CX3g026118 | 3:7,471,468-7,472,154 | + | C1H6g31651 | - | - | - | - | Detail |
| CX3g025180 | 3:7,476,453-7,476,713 | - | C1H3g15415 | C2H3g24218 | - | Os03g0260432 | - | Detail |
| CX3g027434 | 3:7,483,952-7,485,455 | - | C1H3g24057 | C2H3g02662 | LOC_Os03g11060 | Os03g0209000 | - | Detail |
| CX3g030990 | 3:7,488,777-7,491,302 | + | C1H3g04803 | C2H3g12059 | LOC_Os03g15440 | Os03g0260600 | - | Detail |
| CX3g027478 | 3:7,497,081-7,497,428 | - | - | - | - | Os11g0474000 | - | Detail |
| CX3g026582 | 3:7,500,542-7,502,054 | + | C1H3g25766 | C2H3g02089 | - | Os03g0261100 | PLA2-II | Detail |
| CX3g029112 | 3:7,506,703-7,510,858 | + | C1H3g29084 | C2H3g03272 | LOC_Os03g15480 | Os03g0261500 | - | Detail |
| CX3g025214 | 3:7,524,384-7,525,574 | - | C1H3g27014 | C2H3g15693 | LOC_Os03g15530 | Os03g0261800 | - | Detail |
| CX3g031071 | 3:7,538,390-7,547,439 | - | C1H3g01966 | C2H3g11801 | LOC_Os03g15540 | Os03g0261900 | - | Detail |