| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g23293 | 9:17,237,498-17,241,720 | - | C1H9g12508 | CX9g056886 | LOC_Os09g34990 | Os09g0521800 | - | Detail |
| C2H9g12959 | 9:17,244,294-17,248,356 | + | C1H9g22775 | CX9g058042 | LOC_Os09g35000 | Os09g0521900 | RAD, OsGEN1, rad, rad*, OsRAD, GEN1, OsGEN-L | Detail |
| C2H9g15101 | 9:17,249,838-17,250,716 | + | - | - | - | - | - | Detail |
| C2H9g06843 | 9:17,263,090-17,263,671 | + | - | CX11g014678 | - | - | - | Detail |
| C2H9g00413 | 9:17,263,682-17,263,970 | + | - | - | - | - | - | Detail |
| C2H9g13075 | 9:17,315,214-17,317,637 | - | C1H9g22926 | CX9g057513 | LOC_Os09g35630 | Os09g0524800 | - | Detail |
| C2H9g25776 | 9:17,325,847-17,329,040 | + | C1H9g31662 | CX9g056603 | LOC_Os09g35670 | Os09g0525200 | - | Detail |
| C2H9g21918 | 9:17,329,621-17,332,264 | - | C1H9g25445 | CX9g055378 | LOC_Os09g35680 | Os09g0525300 | - | Detail |
| C2H9g18090 | 9:17,332,743-17,333,235 | + | - | - | - | - | - | Detail |
| C2H9g16534 | 9:17,336,698-17,341,474 | - | C1H9g08911 | CX9g058055 | LOC_Os09g35690 | Os09g0525400 | E3BB | Detail |
| C2H9g00761 | 9:17,342,206-17,342,619 | + | C1H9g02024 | CX9g057849 | LOC_Os09g35700 | Os09g0525500 | - | Detail |
| C2H9g16855 | 9:17,343,281-17,348,296 | - | C1H9g15317 | CX9g057451 | LOC_Os09g35710 | Os09g0525600 | - | Detail |
| C2H9g29379 | 9:17,350,467-17,356,488 | - | C1H9g29308 | CX9g057247 | LOC_Os09g35720 | Os09g0525700 | - | Detail |
| C2H9g07857 | 9:17,358,469-17,361,650 | - | C1H9g08625 | CX9g055034 | LOC_Os09g35730 | Os09g0525900 | - | Detail |
| C2H9g18140 | 9:17,365,844-17,367,855 | + | C1H9g31758 | CX9g054877 | LOC_Os09g35740 | - | - | Detail |
| C2H9g08359 | 9:17,379,953-17,386,025 | - | C1H9g21556 | CX9g057694 | LOC_Os09g35760 | Os09g0526300 | - | Detail |
| C2H9g23914 | 9:17,398,899-17,399,452 | - | C1H9g12923 | - | - | - | - | Detail |
| C2H9g25457 | 9:17,401,310-17,402,916 | - | C1H9g05187 | CX9g056876 | LOC_Os09g35790 | Os09g0526600 | - | Detail |
| C2H9g28414 | 9:17,408,099-17,410,200 | - | C1H9g15216 | CX9g055153 | LOC_Os09g35800 | Os09g0526700 | - | Detail |
| C2H9g05438 | 9:17,413,778-17,416,569 | - | C1H9g04329 | CX9g057418 | LOC_Os09g35810 | Os09g0526800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026336 | 3:7,406,619-7,408,322 | + | C1H3g24652 | C2H3g23907 | LOC_Os03g15290 | Os03g0258500 | ATG6C, OsATG6c, OsATG6b | Detail |
| CX3g028133 | 3:7,417,716-7,419,407 | + | C1H3g15329 | C2H3g03473 | LOC_Os03g15320 | Os03g0258900 | - | Detail |
| CX3g029872 | 3:7,432,640-7,433,111 | + | C1H3g03982 | C2H3g20701 | LOC_Os03g15340 | Os03g0259100 | - | Detail |
| CX3g031115 | 3:7,434,049-7,440,702 | + | C1H3g01705 | C2H3g11980 | LOC_Os03g15350 | Os03g0259300 | - | Detail |
| CX3g028643 | 3:7,441,944-7,443,392 | - | C1H3g16374 | C2H3g23041 | LOC_Os03g15360 | Os03g0259400 | - | Detail |
| CX3g027649 | 3:7,447,030-7,448,934 | + | C1H3g08146 | C2H3g02482 | LOC_Os03g15380 | Os03g0259600 | - | Detail |
| CX3g025462 | 3:7,449,997-7,453,100 | - | C1H3g29794 | C2H3g06614 | LOC_Os03g15390 | Os03g0259700 | - | Detail |
| CX3g025456 | 3:7,453,737-7,453,913 | + | - | - | - | - | - | Detail |
| CX3g026758 | 3:7,458,660-7,461,638 | + | C1H3g00578 | C2H3g21664 | LOC_Os03g15410 | Os03g0259900 | - | Detail |
| CX3g026569 | 3:7,463,841-7,465,877 | + | C1H3g24107 | C2H3g30516 | LOC_Os03g15420 | Os03g0260000 | - | Detail |
| CX3g025990 | 3:7,466,634-7,470,970 | - | C1H3g10606 | C2H3g29512 | LOC_Os03g15430 | Os03g0260100 | - | Detail |
| CX3g026118 | 3:7,471,468-7,472,154 | + | C1H6g31651 | - | - | - | - | Detail |
| CX3g025180 | 3:7,476,453-7,476,713 | - | C1H3g15415 | C2H3g24218 | - | Os03g0260432 | - | Detail |
| CX3g027434 | 3:7,483,952-7,485,455 | - | C1H3g24057 | C2H3g02662 | LOC_Os03g11060 | Os03g0209000 | - | Detail |
| CX3g030990 | 3:7,488,777-7,491,302 | + | C1H3g04803 | C2H3g12059 | LOC_Os03g15440 | Os03g0260600 | - | Detail |
| CX3g027478 | 3:7,497,081-7,497,428 | - | - | - | - | Os11g0474000 | - | Detail |
| CX3g026582 | 3:7,500,542-7,502,054 | + | C1H3g25766 | C2H3g02089 | - | Os03g0261100 | PLA2-II | Detail |
| CX3g029112 | 3:7,506,703-7,510,858 | + | C1H3g29084 | C2H3g03272 | LOC_Os03g15480 | Os03g0261500 | - | Detail |
| CX3g025214 | 3:7,524,384-7,525,574 | - | C1H3g27014 | C2H3g15693 | LOC_Os03g15530 | Os03g0261800 | - | Detail |
| CX3g031071 | 3:7,538,390-7,547,439 | - | C1H3g01966 | C2H3g11801 | LOC_Os03g15540 | Os03g0261900 | - | Detail |