| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04528 | 3:30,272,971-30,276,458 | - | C2H3g10423 | CX3g030035 | LOC_Os03g56840 | Os03g0781000 | - | Detail |
| C1H3g00697 | 3:30,277,279-30,279,840 | + | C2H3g00662 | CX3g028006 | LOC_Os03g56850 | Os03g0781100 | - | Detail |
| C1H3g00675 | 3:30,281,992-30,282,671 | - | C2H3g16006 | CX3g031346 | LOC_Os03g56860 | Os03g0781300 | - | Detail |
| C1H3g13066 | 3:30,283,566-30,285,409 | - | C2H3g09130 | CX3g029784 | LOC_Os03g56869 | Os03g0781400 | - | Detail |
| C1H3g04826 | 3:30,290,489-30,291,705 | - | C2H3g00286 | CX3g028940 | LOC_Os03g56900 | Os03g0781700 | - | Detail |
| C1H3g18147 | 3:30,312,183-30,315,005 | + | C2H3g19846 | CX3g026212 | LOC_Os03g56950 | Os03g0782500 | PIL13, OsPIL1, OsPIL13, OsbHLH152 | Detail |
| C1H3g10536 | 3:30,321,645-30,324,279 | - | C2H3g26278 | CX3g026808 | LOC_Os03g56960 | Os03g0782900 | - | Detail |
| C1H3g29435 | 3:30,324,400-30,329,732 | + | C2H3g17813 | CX3g030659 | LOC_Os03g56970 | Os03g0783000 | - | Detail |
| C1H3g09935 | 3:30,341,282-30,343,468 | + | C2H3g21267 | - | LOC_Os03g56490 | Os03g0783100 | - | Detail |
| C1H3g22666 | 3:30,344,697-30,345,825 | + | C2H3g27771 | - | LOC_Os03g57010 | Os03g0783100 | - | Detail |
| C1H3g16399 | 3:30,381,888-30,383,625 | - | C2H3g11026 | CX3g026130 | LOC_Os03g57040 | Os03g0783700 | - | Detail |
| C1H3g28995 | 3:30,391,278-30,394,724 | + | C2H3g20647 | CX3g025168 | LOC_Os03g57070 | Os03g0784000 | - | Detail |
| C1H3g19825 | 3:30,400,048-30,401,648 | - | C2H3g12289 | CX3g027646 | LOC_Os03g57080 | Os03g0784100 | - | Detail |
| C1H3g16412 | 3:30,410,869-30,413,489 | - | C2H3g18782 | - | LOC_Os03g57090 | Os03g0784300 | - | Detail |
| C1H3g13683 | 3:30,414,073-30,419,664 | + | C2H3g11402 | CX3g031049 | LOC_Os03g57100 | Os03g0784400 | - | Detail |
| C1H3g10935 | 3:30,419,902-30,424,841 | - | C2H3g07899 | CX3g030487 | LOC_Os03g57110 | Os03g0784500 | - | Detail |
| C1H3g05217 | 3:30,426,462-30,428,894 | - | C2H3g13132 | CX3g029787 | LOC_Os03g57120 | Os03g0784700 | - | Detail |
| C1H3g28643 | 3:30,430,025-30,435,515 | - | C2H3g20434 | CX3g028010 | LOC_Os03g57130 | Os03g0784800 | - | Detail |
| C1H3g24334 | 3:30,440,152-30,442,114 | - | C2H3g13858 | CX3g030089 | LOC_Os03g57140 | Os03g0784900 | - | Detail |
| C1H3g27734 | 3:30,446,671-30,447,609 | - | C2H3g24386 | CX3g029863 | LOC_Os03g57149 | Os03g0785200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026336 | 3:7,406,619-7,408,322 | + | C1H3g24652 | C2H3g23907 | LOC_Os03g15290 | Os03g0258500 | ATG6C, OsATG6c, OsATG6b | Detail |
| CX3g028133 | 3:7,417,716-7,419,407 | + | C1H3g15329 | C2H3g03473 | LOC_Os03g15320 | Os03g0258900 | - | Detail |
| CX3g029872 | 3:7,432,640-7,433,111 | + | C1H3g03982 | C2H3g20701 | LOC_Os03g15340 | Os03g0259100 | - | Detail |
| CX3g031115 | 3:7,434,049-7,440,702 | + | C1H3g01705 | C2H3g11980 | LOC_Os03g15350 | Os03g0259300 | - | Detail |
| CX3g028643 | 3:7,441,944-7,443,392 | - | C1H3g16374 | C2H3g23041 | LOC_Os03g15360 | Os03g0259400 | - | Detail |
| CX3g027649 | 3:7,447,030-7,448,934 | + | C1H3g08146 | C2H3g02482 | LOC_Os03g15380 | Os03g0259600 | - | Detail |
| CX3g025462 | 3:7,449,997-7,453,100 | - | C1H3g29794 | C2H3g06614 | LOC_Os03g15390 | Os03g0259700 | - | Detail |
| CX3g025456 | 3:7,453,737-7,453,913 | + | - | - | - | - | - | Detail |
| CX3g026758 | 3:7,458,660-7,461,638 | + | C1H3g00578 | C2H3g21664 | LOC_Os03g15410 | Os03g0259900 | - | Detail |
| CX3g026569 | 3:7,463,841-7,465,877 | + | C1H3g24107 | C2H3g30516 | LOC_Os03g15420 | Os03g0260000 | - | Detail |
| CX3g025990 | 3:7,466,634-7,470,970 | - | C1H3g10606 | C2H3g29512 | LOC_Os03g15430 | Os03g0260100 | - | Detail |
| CX3g026118 | 3:7,471,468-7,472,154 | + | C1H6g31651 | - | - | - | - | Detail |
| CX3g025180 | 3:7,476,453-7,476,713 | - | C1H3g15415 | C2H3g24218 | - | Os03g0260432 | - | Detail |
| CX3g027434 | 3:7,483,952-7,485,455 | - | C1H3g24057 | C2H3g02662 | LOC_Os03g11060 | Os03g0209000 | - | Detail |
| CX3g030990 | 3:7,488,777-7,491,302 | + | C1H3g04803 | C2H3g12059 | LOC_Os03g15440 | Os03g0260600 | - | Detail |
| CX3g027478 | 3:7,497,081-7,497,428 | - | - | - | - | Os11g0474000 | - | Detail |
| CX3g026582 | 3:7,500,542-7,502,054 | + | C1H3g25766 | C2H3g02089 | - | Os03g0261100 | PLA2-II | Detail |
| CX3g029112 | 3:7,506,703-7,510,858 | + | C1H3g29084 | C2H3g03272 | LOC_Os03g15480 | Os03g0261500 | - | Detail |
| CX3g025214 | 3:7,524,384-7,525,574 | - | C1H3g27014 | C2H3g15693 | LOC_Os03g15530 | Os03g0261800 | - | Detail |
| CX3g031071 | 3:7,538,390-7,547,439 | - | C1H3g01966 | C2H3g11801 | LOC_Os03g15540 | Os03g0261900 | - | Detail |