| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08866 | 3:4,746,841-4,749,557 | + | C2H3g27684 | CX3g025008 | LOC_Os03g10460 | Os03g0201700 | - | Detail |
| C1H3g26823 | 3:4,749,420-4,752,363 | - | C2H3g15317 | CX3g027908 | LOC_Os03g10469 | Os03g0201800 | - | Detail |
| C1H3g22443 | 3:4,753,242-4,757,638 | - | C2H3g07444 | CX3g027908 | LOC_Os03g10478 | Os03g0201901 | - | Detail |
| C1H3g14443 | 3:4,763,199-4,766,780 | - | C2H3g09161 | CX3g028036 | LOC_Os03g10500 | Os03g0202001 | - | Detail |
| C1H3g22113 | 3:4,769,015-4,772,493 | - | C2H3g24025 | CX3g026152 | LOC_Os03g10510 | Os03g0202200 | OsVDAC5 | Detail |
| C1H3g27837 | 3:4,773,524-4,777,490 | - | C2H3g13194 | CX3g030169 | LOC_Os03g10520 | Os03g0202300 | - | Detail |
| C1H3g27666 | 3:4,778,936-4,781,970 | - | C2H3g17561 | CX3g025689 | LOC_Os03g10590 | Os03g0203000 | - | Detail |
| C1H3g27625 | 3:4,785,357-4,791,941 | + | C2H3g21513 | CX3g029844 | LOC_Os03g10600 | Os03g0203100 | - | Detail |
| C1H3g03653 | 3:4,804,314-4,805,361 | + | C2H3g08169 | CX3g027943 | LOC_Os03g10620 | Os03g0203200 | D14, D88, D88/D14, qPPB3, HTD4 | Detail |
| C1H3g22146 | 3:4,815,496-4,822,429 | + | C2H3g27974 | CX3g027605 | LOC_Os03g10640 | Os03g0203700 | - | Detail |
| C1H3g29891 | 3:4,824,485-4,825,962 | - | C2H3g08201 | CX3g028482 | LOC_Os03g10650 | Os03g0203800 | - | Detail |
| C1H3g06442 | 3:4,845,357-4,849,712 | + | C2H3g30001 | CX3g026677 | LOC_Os03g10680 | Os03g0204100 | - | Detail |
| C1H3g30369 | 3:4,853,202-4,854,391 | + | C2H3g23547 | CX3g029117 | LOC_Os03g10730 | - | - | Detail |
| C1H3g08546 | 3:4,861,677-4,862,096 | - | C2H3g15767 | - | LOC_Os03g10710 | Os03g0204500 | - | Detail |
| C1H3g00980 | 3:4,865,396-4,867,084 | + | C2H3g08384 | CX3g029117 | LOC_Os03g10730 | - | - | Detail |
| C1H3g16112 | 3:4,872,534-4,875,426 | + | C2H3g07827 | CX3g030767 | LOC_Os03g10730 | Os03g0157000 | - | Detail |
| C1H3g05329 | 3:4,876,244-4,876,674 | - | C2H3g15453 | - | LOC_Os03g10740 | Os03g0204900 | - | Detail |
| C1H3g13244 | 3:4,882,706-4,888,504 | - | C2H3g17885 | CX3g028803 | LOC_Os03g10750 | Os03g0205000 | SPL35 | Detail |
| C1H3g05069 | 3:4,891,051-4,892,879 | - | C2H3g11575 | - | LOC_Os03g10755 | Os03g0205150 | - | Detail |
| C1H3g10116 | 3:4,895,571-4,896,991 | - | C2H3g22270 | CX3g030429 | LOC_Os03g10770 | Os03g0205300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026336 | 3:7,406,619-7,408,322 | + | C1H3g24652 | C2H3g23907 | LOC_Os03g15290 | Os03g0258500 | ATG6C, OsATG6c, OsATG6b | Detail |
| CX3g028133 | 3:7,417,716-7,419,407 | + | C1H3g15329 | C2H3g03473 | LOC_Os03g15320 | Os03g0258900 | - | Detail |
| CX3g029872 | 3:7,432,640-7,433,111 | + | C1H3g03982 | C2H3g20701 | LOC_Os03g15340 | Os03g0259100 | - | Detail |
| CX3g031115 | 3:7,434,049-7,440,702 | + | C1H3g01705 | C2H3g11980 | LOC_Os03g15350 | Os03g0259300 | - | Detail |
| CX3g028643 | 3:7,441,944-7,443,392 | - | C1H3g16374 | C2H3g23041 | LOC_Os03g15360 | Os03g0259400 | - | Detail |
| CX3g027649 | 3:7,447,030-7,448,934 | + | C1H3g08146 | C2H3g02482 | LOC_Os03g15380 | Os03g0259600 | - | Detail |
| CX3g025462 | 3:7,449,997-7,453,100 | - | C1H3g29794 | C2H3g06614 | LOC_Os03g15390 | Os03g0259700 | - | Detail |
| CX3g025456 | 3:7,453,737-7,453,913 | + | - | - | - | - | - | Detail |
| CX3g026758 | 3:7,458,660-7,461,638 | + | C1H3g00578 | C2H3g21664 | LOC_Os03g15410 | Os03g0259900 | - | Detail |
| CX3g026569 | 3:7,463,841-7,465,877 | + | C1H3g24107 | C2H3g30516 | LOC_Os03g15420 | Os03g0260000 | - | Detail |
| CX3g025990 | 3:7,466,634-7,470,970 | - | C1H3g10606 | C2H3g29512 | LOC_Os03g15430 | Os03g0260100 | - | Detail |
| CX3g026118 | 3:7,471,468-7,472,154 | + | C1H6g31651 | - | - | - | - | Detail |
| CX3g025180 | 3:7,476,453-7,476,713 | - | C1H3g15415 | C2H3g24218 | - | Os03g0260432 | - | Detail |
| CX3g027434 | 3:7,483,952-7,485,455 | - | C1H3g24057 | C2H3g02662 | LOC_Os03g11060 | Os03g0209000 | - | Detail |
| CX3g030990 | 3:7,488,777-7,491,302 | + | C1H3g04803 | C2H3g12059 | LOC_Os03g15440 | Os03g0260600 | - | Detail |
| CX3g027478 | 3:7,497,081-7,497,428 | - | - | - | - | Os11g0474000 | - | Detail |
| CX3g026582 | 3:7,500,542-7,502,054 | + | C1H3g25766 | C2H3g02089 | - | Os03g0261100 | PLA2-II | Detail |
| CX3g029112 | 3:7,506,703-7,510,858 | + | C1H3g29084 | C2H3g03272 | LOC_Os03g15480 | Os03g0261500 | - | Detail |
| CX3g025214 | 3:7,524,384-7,525,574 | - | C1H3g27014 | C2H3g15693 | LOC_Os03g15530 | Os03g0261800 | - | Detail |
| CX3g031071 | 3:7,538,390-7,547,439 | - | C1H3g01966 | C2H3g11801 | LOC_Os03g15540 | Os03g0261900 | - | Detail |