| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g31584 | 9:14,397,174-14,398,148 | - | C2H9g05249 | CX9g055140 | LOC_Os09g28750 | Os09g0462200 | - | Detail |
| C1H9g31193 | 9:14,398,159-14,399,079 | - | C2H9g03017 | - | - | Os09g0462301 | - | Detail |
| C1H9g18452 | 9:14,402,609-14,405,130 | + | C2H9g27701 | CX9g057311 | LOC_Os09g28770 | Os09g0462400 | OsMATL2, OspPLAIIeta, OspPLA-IIalpha | Detail |
| C1H9g29610 | 9:14,407,442-14,407,735 | + | C2H9g19629 | CX9g056435 | LOC_Os09g28780 | Os08g0475500 | OsCEP6, OsCEP6.1 | Detail |
| C1H9g28013 | 9:14,417,767-14,421,876 | + | C2H9g05705 | CX9g055048 | LOC_Os09g28810 | Os09g0462700 | - | Detail |
| C1H9g15723 | 9:14,423,139-14,423,470 | + | C2H9g21321 | - | - | Os09g0462850 | - | Detail |
| C1H9g15089 | 9:14,425,555-14,428,291 | - | C2H9g19364 | CX9g057216 | LOC_Os09g28830 | Os09g0462875 | - | Detail |
| C1H9g24460 | 9:14,431,895-14,435,261 | - | C2H9g06754 | CX9g056317 | LOC_Os09g28840 | Os09g0463100 | - | Detail |
| C1H9g16758 | 9:14,443,505-14,446,049 | - | C2H9g26932 | - | - | - | - | Detail |
| C1H9g08405 | 9:14,445,917-14,450,400 | + | C2H9g17616 | CX9g055989 | LOC_Os09g28850 | Os09g0463300 | - | Detail |
| C1H9g27922 | 9:14,462,626-14,463,366 | + | C2H8g04634 | CX8g053678 | LOC_Os09g28880 | Os09g0463600 | - | Detail |
| C1H9g22383 | 9:14,469,635-14,470,756 | + | - | CX8g050532 | LOC_Os09g28890 | Os09g0463700 | - | Detail |
| C1H9g29908 | 9:14,477,978-14,478,205 | + | C2H9g06208 | CX9g058102 | LOC_Os09g28900 | Os09g0463900 | - | Detail |
| C1H9g13495 | 9:14,479,436-14,479,918 | + | C2H9g06208 | CX9g055813 | LOC_Os09g28900 | Os09g0410700 | - | Detail |
| C1H9g11908 | 9:14,481,560-14,486,123 | - | C2H9g27359 | CX9g057340 | LOC_Os09g28910 | Os09g0464000 | - | Detail |
| C1H9g03015 | 9:14,485,149-14,486,023 | + | - | - | - | Os09g0464066 | - | Detail |
| C1H9g26305 | 9:14,498,312-14,499,307 | - | C2H9g21979 | CX9g056952 | LOC_Os09g28930 | Os09g0464300 | - | Detail |
| C1H9g02656 | 9:14,510,601-14,518,761 | - | C2H9g10275 | CX9g056356 | LOC_Os09g28940 | Os09g0464400 | - | Detail |
| C1H9g11367 | 9:14,531,631-14,532,587 | - | C2H9g26296 | CX9g057742 | LOC_Os09g29050 | Os09g0465400 | - | Detail |
| C1H9g04483 | 9:14,534,358-14,537,056 | + | C2H9g25155 | CX9g057144 | LOC_Os09g29060 | Os09g0465500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030092 | 3:6,411,081-6,411,377 | - | C1H3g16339 | C2H3g08004 | LOC_Os03g15100 | - | - | Detail |
| CX3g025606 | 3:6,418,607-6,420,992 | + | C1H3g10596 | C2H3g28344 | LOC_Os03g13300 | Os03g0236200 | OsGAD3 | Detail |
| CX3g028412 | 3:6,421,692-6,422,420 | + | C1H3g16595 | C2H3g08962 | LOC_Os03g13310 | Os03g0236300 | Os2R_MYB34 | Detail |
| CX3g027075 | 3:6,425,432-6,426,373 | - | - | - | - | - | - | Detail |
| CX3g027825 | 3:6,427,085-6,428,224 | - | C1H3g09841 | C2H3g11740 | LOC_Os03g13340 | Os03g0236675 | - | Detail |
| CX3g027924 | 3:6,430,283-6,430,918 | + | C1H3g26140 | C2H3g20390 | LOC_Os03g13360 | Os03g0236800 | - | Detail |
| CX3g026764 | 3:6,432,429-6,433,079 | + | C1H3g26595 | C2H3g08095 | LOC_Os03g13370 | Os03g0236900 | - | Detail |
| CX3g030333 | 3:6,433,960-6,443,066 | + | C1H3g30353 | C2H3g11238 | LOC_Os03g13370 | Os03g0236966 | OsAPC6 | Detail |
| CX3g025761 | 3:6,446,421-6,450,032 | + | C1H3g16967 | C2H3g29074 | LOC_Os03g13380 | Os03g0237000 | - | Detail |
| CX3g026598 | 3:6,452,653-6,454,595 | + | C1H3g11077 | - | LOC_Os03g13390 | Os03g0237100 | - | Detail |
| CX3g027254 | 3:6,459,506-6,464,012 | - | C1H3g08429 | C2H3g28705 | LOC_Os03g13400 | Os03g0237250 | OsIDD14, LPA1 | Detail |
| CX3g028559 | 3:6,485,719-6,486,261 | + | C1H3g09361 | C2H3g29962 | LOC_Os03g13450 | Os03g0237500 | - | Detail |
| CX3g028914 | 3:6,489,862-6,495,001 | - | C1H3g17244 | C2H3g03025 | LOC_Os03g13460 | Os03g0237600 | - | Detail |
| CX3g030120 | 3:6,501,529-6,504,205 | - | C1H3g24201 | C2H3g23135 | LOC_Os03g13480 | Os03g0237900 | - | Detail |
| CX3g025055 | 3:6,504,868-6,505,335 | - | C1H3g24201 | C2H3g23135 | LOC_Os03g13490 | Os03g0237950 | - | Detail |
| CX3g025312 | 3:6,511,387-6,514,293 | - | C1H3g02595 | C2H3g22282 | LOC_Os03g13520 | Os03g0238300 | - | Detail |
| CX3g029412 | 3:6,531,052-6,533,502 | + | C1H3g23768 | C2H3g15172 | LOC_Os03g13540 | Os03g0238600 | - | Detail |
| CX3g024975 | 3:6,534,374-6,534,532 | + | - | - | - | - | - | Detail |
| CX3g030281 | 3:6,534,594-6,537,743 | - | C1H3g02167 | C2H3g18176 | LOC_Os03g13550 | Os03g0238700 | - | Detail |
| CX3g028158 | 3:6,538,662-6,543,773 | - | C1H3g21099 | C2H3g03887 | LOC_Os03g13560 | Os03g0238800 | - | Detail |