| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g26116 | 1:27,134,538-27,137,366 | - | C1H1g10786 | CX1g004596 | - | - | - | Detail |
| C2H1g28261 | 1:27,142,183-27,146,094 | + | C1H1g07765 | CX1g004752 | LOC_Os01g53000 | Os01g0730300 | - | Detail |
| C2H1g16061 | 1:27,152,562-27,154,773 | + | C1H1g14431 | CX1g000426 | LOC_Os01g53020 | Os01g0730500 | - | Detail |
| C2H1g14164 | 1:27,155,252-27,155,722 | - | C1H1g06535 | CX1g000294 | LOC_Os01g53030 | Os01g0730600 | - | Detail |
| C2H1g07251 | 1:27,159,877-27,164,278 | - | - | - | - | - | - | Detail |
| C2H1g00487 | 1:27,165,973-27,167,070 | - | C1H1g09914 | CX1g001404 | LOC_Os01g53040 | Os01g0730700 | OsWRKY14 | Detail |
| C2H1g11513 | 1:27,172,515-27,178,459 | + | C1H1g06745 | CX1g000168 | LOC_Os01g53060 | Os01g0730800 | - | Detail |
| C2H1g14311 | 1:27,175,094-27,182,365 | - | C1H1g24583 | CX1g001666 | LOC_Os01g53070 | Os01g0730900 | - | Detail |
| C2H1g06139 | 1:27,187,784-27,192,946 | - | C1H1g26539 | CX1g001800 | LOC_Os01g53079 | Os01g0731000 | - | Detail |
| C2H1g15826 | 1:27,193,168-27,196,635 | + | - | - | LOC_Os01g52840 | - | - | Detail |
| C2H1g09687 | 1:27,201,151-27,202,174 | - | C1H1g09554 | - | LOC_Os01g53090 | Os01g0731100 | - | Detail |
| C2H1g22498 | 1:27,209,193-27,210,171 | - | C1H1g09554 | - | LOC_Os01g53090 | Os01g0731100 | - | Detail |
| C2H1g25202 | 1:27,213,665-27,216,703 | - | C1H1g05462 | CX1g002698 | LOC_Os01g53130 | Os01g0731800 | - | Detail |
| C2H1g12212 | 1:27,221,578-27,221,790 | - | C1H1g13195 | CX1g002007 | - | Os01g0732000 | - | Detail |
| C2H1g12385 | 1:27,222,104-27,222,343 | + | C1H1g19403 | CX1g005912 | LOC_Os01g53140 | Os01g0750800 | - | Detail |
| C2H1g09330 | 1:27,225,810-27,230,209 | + | C1H1g18233 | CX1g006701 | LOC_Os01g53150 | Os01g0732200 | - | Detail |
| C2H1g23680 | 1:27,238,889-27,250,648 | + | C1H1g17097 | CX1g000356 | LOC_Os01g53200 | Os01g0732700 | YUCCA3, OsYUCCA3 | Detail |
| C2H1g25806 | 1:27,253,877-27,254,203 | - | C1H1g06233 | CX1g002859 | - | - | - | Detail |
| C2H1g04447 | 1:27,260,739-27,261,589 | + | C1H1g02415 | CX1g003483 | LOC_Os01g53220 | Os01g0733200 | OsHsfC1b | Detail |
| C2H1g19099 | 1:27,264,408-27,268,847 | - | C1H1g21238 | CX1g006706 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029569 | 3:6,303,237-6,304,958 | - | C1H3g01497 | C2H3g13166 | LOC_Os03g13030 | Os03g0232800 | - | Detail |
| CX3g027690 | 3:6,306,052-6,309,814 | - | C1H3g06697 | C2H3g05297 | LOC_Os03g13040 | Os03g0232900 | - | Detail |
| CX3g025209 | 3:6,308,144-6,308,644 | + | - | - | - | - | - | Detail |
| CX3g025391 | 3:6,322,656-6,323,810 | + | C1H3g26874 | C2H3g03038 | LOC_Os03g13050 | Os03g0233000 | - | Detail |
| CX3g030154 | 3:6,325,953-6,327,113 | - | C1H3g16800 | C2H3g18690 | LOC_Os03g13070 | Os03g0233200 | - | Detail |
| CX3g029185 | 3:6,328,301-6,330,181 | - | C1H3g06079 | C2H3g14812 | LOC_Os03g13080 | Os03g0233300 | OsLysM-RLK2, OsLYK5, OsNFR5/OsRLK2 | Detail |
| CX3g028548 | 3:6,335,026-6,338,543 | + | C1H3g06632 | C2H3g23005 | LOC_Os03g13100 | Os03g0233500 | - | Detail |
| CX3g029407 | 3:6,343,264-6,346,320 | + | C1H3g16553 | C2H3g09799 | LOC_Os03g13130 | Os03g0233800 | - | Detail |
| CX3g025432 | 3:6,347,254-6,348,096 | + | C1H3g27731 | C2H3g17247 | LOC_Os03g13140 | Os03g0233900 | Hb1, OsPgb1.1 | Detail |
| CX3g027207 | 3:6,350,996-6,351,870 | + | C1H3g19664 | C2H3g00667 | LOC_Os03g13150 | Os03g0234000 | - | Detail |
| CX3g030474 | 3:6,354,116-6,355,105 | + | C1H3g02151 | C2H3g02090 | LOC_Os03g13160 | Os03g0234100 | - | Detail |
| CX3g028385 | 3:6,360,911-6,362,107 | + | C1H3g22268 | C2H3g20297 | LOC_Os03g13180 | Os03g0234500 | - | Detail |
| CX3g027164 | 3:6,363,878-6,368,555 | - | C1H3g22029 | C2H3g00447 | LOC_Os03g13190 | Os03g0234600 | - | Detail |
| CX3g030874 | 3:6,374,735-6,376,766 | - | C1H3g04582 | C2H3g06567 | LOC_Os03g13200 | Os03g0234900 | - | Detail |
| CX3g029207 | 3:6,378,367-6,380,080 | - | C1H3g27078 | C2H3g02755 | LOC_Os03g13210 | Os03g0235000 | - | Detail |
| CX3g031242 | 3:6,383,705-6,387,584 | + | C1H3g26089 | C2H3g08839 | LOC_Os03g13220 | Os03g0235100 | - | Detail |
| CX3g025226 | 3:6,388,902-6,390,830 | + | C1H3g13556 | C2H3g17418 | LOC_Os03g13230 | Os03g0235200 | - | Detail |
| CX3g028197 | 3:6,391,496-6,395,482 | - | C1H3g13432 | C2H3g00836 | LOC_Os03g13240 | Os03g0235300 | - | Detail |
| CX3g027179 | 3:6,396,462-6,402,616 | - | C1H3g17503 | C2H3g23746 | LOC_Os03g13250 | Os03g0235700 | - | Detail |
| CX3g029098 | 3:6,410,614-6,410,946 | - | C1H3g11550 | C2H3g04912 | LOC_Os03g13530 | Os03g0743650 | - | Detail |