| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g21824 | 4:11,392,520-11,394,651 | + | C2H4g05430 | CX4g033015 | LOC_Os04g23820 | Os04g0303900 | - | Detail |
| C1H4g20117 | 4:11,395,346-11,400,455 | - | C2H4g23748 | CX4g035976 | LOC_Os04g23830 | Os04g0303950 | - | Detail |
| C1H4g14531 | 4:11,407,053-11,409,872 | - | C2H4g14626 | CX4g033018 | LOC_Os04g23849 | Os04g0304000 | - | Detail |
| C1H4g03483 | 4:11,421,262-11,433,495 | - | C2H4g21835 | CX4g032002 | LOC_Os04g23890 | Os04g0304200 | PHOT2, OsPHOT2, OsNPH1b | Detail |
| C1H4g28183 | 4:11,433,682-11,433,888 | - | - | - | - | - | - | Detail |
| C1H4g29080 | 4:11,459,311-11,461,518 | + | C2H4g30545 | CX4g034278 | LOC_Os04g23910 | Os04g0304400 | OsMADS25 | Detail |
| C1H4g12281 | 4:11,481,797-11,483,161 | - | C2H4g15928 | CX11g012075 | LOC_Os04g23940 | Os11g0566800 | OsCHS28 | Detail |
| C1H4g30822 | 4:11,540,116-11,544,461 | + | - | - | - | - | - | Detail |
| C1H4g25334 | 4:11,567,247-11,579,709 | - | C2H4g10003 | CX4g035750 | LOC_Os04g24170 | Os04g0306800 | - | Detail |
| C1H4g03408 | 4:11,584,842-11,590,287 | + | C2H4g25027 | - | LOC_Os08g15600 | - | - | Detail |
| C1H4g27699 | 4:11,590,623-11,596,884 | + | C2H4g09830 | CX4g033768 | LOC_Os04g24180 | Os04g0307200 | - | Detail |
| C1H4g00825 | 4:11,624,558-11,630,727 | + | C2H4g00695 | CX4g035129 | LOC_Os04g24300 | Os04g0307500 | - | Detail |
| C1H4g07699 | 4:11,640,696-11,645,424 | + | C2H4g00695 | CX4g035129 | LOC_Os04g24220 | Os04g0307500 | - | Detail |
| C1H4g00508 | 4:11,726,120-11,735,396 | - | C2H4g28826 | CX4g036427 | - | Os04g0307800 | - | Detail |
| C1H4g14590 | 4:11,740,035-11,741,234 | - | - | - | - | - | - | Detail |
| C1H4g01491 | 4:11,744,314-11,744,648 | + | C2H4g26507 | CX4g035129 | LOC_Os04g24300 | Os04g0367201 | - | Detail |
| C1H4g03399 | 4:11,766,396-11,771,130 | + | C2H4g13677 | CX4g035129 | LOC_Os04g24300 | Os04g0308100 | - | Detail |
| C1H4g24002 | 4:11,791,302-11,795,718 | + | C2H4g26507 | CX4g035129 | LOC_Os04g24290 | Os04g0307900 | - | Detail |
| C1H4g23203 | 4:11,820,516-11,821,438 | - | C2H4g14646 | CX4g035161 | LOC_Os04g24319 | Os04g0310200 | - | Detail |
| C1H4g07555 | 4:11,821,976-11,822,866 | + | C2H4g20750 | CX4g032444 | LOC_Os04g24328 | Os04g0310100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029726 | 3:6,127,403-6,130,080 | + | C1H3g02612 | C2H3g25845 | LOC_Os03g12820 | Os03g0230300 | - | Detail |
| CX3g025129 | 3:6,132,010-6,132,339 | - | C1H3g04395 | C2H3g14412 | - | - | - | Detail |
| CX3g029537 | 3:6,134,522-6,139,283 | + | C1H3g30651 | C2H3g19351 | LOC_Os03g12840 | Os03g0230500 | DSM3, DSM3/OsITPK2, OsITL1, OsITPK2 | Detail |
| CX3g027449 | 3:6,142,780-6,142,953 | + | - | - | - | - | - | Detail |
| CX3g028083 | 3:6,167,452-6,168,834 | + | C1H3g20871 | C2H3g08152 | LOC_Os03g12860 | Os03g0231150 | - | Detail |
| CX3g030252 | 3:6,188,413-6,188,810 | + | - | - | - | Os03g0235400 | - | Detail |
| CX3g026479 | 3:6,190,226-6,192,618 | + | C1H3g09365 | C2H3g24795 | LOC_Os03g12890 | Os03g0231600 | OsBCAT2 | Detail |
| CX3g029672 | 3:6,195,226-6,204,465 | - | C1H3g26830 | C2H3g25882 | LOC_Os03g12910 | Os03g0231700 | - | Detail |
| CX3g030393 | 3:6,215,076-6,215,972 | - | C1H3g22291 | C2H3g02909 | LOC_Os08g01570 | Os03g0608700 | - | Detail |
| CX3g030123 | 3:6,216,353-6,216,604 | + | - | - | - | Os08g0106801 | - | Detail |
| CX3g027611 | 3:6,223,573-6,224,168 | - | C1H3g13331 | C2H3g00833 | LOC_Os03g12930 | Os03g0231900 | - | Detail |
| CX3g030152 | 3:6,227,075-6,228,515 | - | C1H3g17846 | C2H3g09594 | LOC_Os03g12940 | Os03g0231950 | - | Detail |
| CX3g030910 | 3:6,234,347-6,235,777 | - | C1H3g04613 | C2H3g04826 | LOC_Os03g12940 | Os03g0232000 | OsFBO13 | Detail |
| CX3g029956 | 3:6,241,174-6,244,882 | - | C1H3g30000 | C2H3g04774 | LOC_Os03g12950 | Os03g0232200 | - | Detail |
| CX3g029446 | 3:6,261,966-6,262,187 | + | C1H3g14582 | C2H4g11700 | - | Os02g0324200 | - | Detail |
| CX3g029518 | 3:6,269,413-6,269,712 | + | - | - | - | - | - | Detail |
| CX3g028212 | 3:6,273,054-6,273,482 | + | C1H3g07150 | C2H3g26123 | LOC_Os03g12990 | Os03g0232400 | - | Detail |
| CX3g028040 | 3:6,276,757-6,277,873 | - | C1H3g22613 | C2H3g04799 | - | Os10g0433200 | - | Detail |
| CX3g028651 | 3:6,278,152-6,280,898 | + | C1H3g28102 | C2H3g26449 | LOC_Os03g13000 | Os03g0232500 | - | Detail |
| CX3g031218 | 3:6,286,359-6,287,738 | - | C1H3g02271 | C2H3g15250 | LOC_Os03g13010 | Os03g0232600 | ELF1, OsPUB31, OsPUB75, TUD1, OsTUD1 | Detail |