| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g20966 | 12:3,302,542-3,312,076 | + | C2H12g28594 | CX12g015598 | LOC_Os12g07300 | Os12g0170700 | - | Detail |
| C1H12g31083 | 12:3,315,836-3,318,161 | + | C2H12g30320 | CX12g018577 | LOC_Os12g07310 | Os12g0170800 | - | Detail |
| C1H12g14333 | 12:3,324,765-3,325,004 | + | C2H12g06137 | CX12g017511 | LOC_Os12g07340 | Os12g0170800 | - | Detail |
| C1H12g02404 | 12:3,328,220-3,328,624 | + | C2H12g23442 | CX12g017511 | LOC_Os12g07310 | Os12g0170800 | - | Detail |
| C1H12g08123 | 12:3,330,842-3,338,060 | + | C2H12g00108 | CX12g017364 | LOC_Os12g07350 | Os12g0171200 | - | Detail |
| C1H12g09894 | 12:3,358,893-3,359,354 | - | C2H8g28836 | CX12g017951 | - | - | - | Detail |
| C1H12g26803 | 12:3,388,120-3,388,792 | + | C2H12g24240 | CX12g016050 | LOC_Os12g07380 | Os12g0171600 | - | Detail |
| C1H12g22841 | 12:3,393,995-3,400,309 | - | C2H12g23734 | CX12g015255 | LOC_Os12g07450 | Os12g0172500 | - | Detail |
| C1H12g20718 | 12:3,445,465-3,446,739 | + | C2H12g19372 | CX12g016915 | LOC_Os12g07480 | Os12g0173300 | - | Detail |
| C1H12g19965 | 12:3,456,225-3,457,255 | + | C2H12g24516 | CX12g016817 | LOC_Os12g07490 | Os12g0173366 | - | Detail |
| C1H12g02920 | 12:3,459,345-3,461,996 | - | C2H12g30484 | CX12g016050 | LOC_Os12g07500 | Os12g0173400 | - | Detail |
| C1H12g26529 | 12:3,462,717-3,468,073 | + | C2H12g29759 | CX12g015915 | LOC_Os12g07530 | - | - | Detail |
| C1H12g02496 | 12:3,471,099-3,476,184 | + | C2H12g09225 | CX12g015330 | LOC_Os12g07540 | Os12g0174100 | - | Detail |
| C1H12g19045 | 12:3,492,580-3,493,308 | + | C2H12g07410 | CX12g017802 | - | Os12g0174300 | - | Detail |
| C1H12g09187 | 12:3,503,366-3,504,504 | + | C2H12g28346 | CX12g017402 | LOC_Os12g07580 | Os12g0174700 | - | Detail |
| C1H12g24191 | 12:3,506,423-3,511,311 | - | C2H12g00464 | CX12g015542 | LOC_Os12g07590 | Os12g0174800 | - | Detail |
| C1H12g21338 | 12:3,541,766-3,542,736 | + | C2H12g23569 | CX12g017649 | LOC_Os12g07640 | Os12g0175400 | Os2R_MYB94 | Detail |
| C1H12g22991 | 12:3,550,454-3,554,122 | - | C2H12g11252 | CX12g017726 | LOC_Os12g07650 | Os12g0175500 | - | Detail |
| C1H12g00864 | 12:3,554,864-3,555,190 | + | C2H12g28545 | CX12g015326 | LOC_Os08g06840 | - | - | Detail |
| C1H12g14489 | 12:3,556,678-3,556,994 | + | C2H12g13795 | - | - | Os12g0175600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029726 | 3:6,127,403-6,130,080 | + | C1H3g02612 | C2H3g25845 | LOC_Os03g12820 | Os03g0230300 | - | Detail |
| CX3g025129 | 3:6,132,010-6,132,339 | - | C1H3g04395 | C2H3g14412 | - | - | - | Detail |
| CX3g029537 | 3:6,134,522-6,139,283 | + | C1H3g30651 | C2H3g19351 | LOC_Os03g12840 | Os03g0230500 | DSM3, DSM3/OsITPK2, OsITL1, OsITPK2 | Detail |
| CX3g027449 | 3:6,142,780-6,142,953 | + | - | - | - | - | - | Detail |
| CX3g028083 | 3:6,167,452-6,168,834 | + | C1H3g20871 | C2H3g08152 | LOC_Os03g12860 | Os03g0231150 | - | Detail |
| CX3g030252 | 3:6,188,413-6,188,810 | + | - | - | - | Os03g0235400 | - | Detail |
| CX3g026479 | 3:6,190,226-6,192,618 | + | C1H3g09365 | C2H3g24795 | LOC_Os03g12890 | Os03g0231600 | OsBCAT2 | Detail |
| CX3g029672 | 3:6,195,226-6,204,465 | - | C1H3g26830 | C2H3g25882 | LOC_Os03g12910 | Os03g0231700 | - | Detail |
| CX3g030393 | 3:6,215,076-6,215,972 | - | C1H3g22291 | C2H3g02909 | LOC_Os08g01570 | Os03g0608700 | - | Detail |
| CX3g030123 | 3:6,216,353-6,216,604 | + | - | - | - | Os08g0106801 | - | Detail |
| CX3g027611 | 3:6,223,573-6,224,168 | - | C1H3g13331 | C2H3g00833 | LOC_Os03g12930 | Os03g0231900 | - | Detail |
| CX3g030152 | 3:6,227,075-6,228,515 | - | C1H3g17846 | C2H3g09594 | LOC_Os03g12940 | Os03g0231950 | - | Detail |
| CX3g030910 | 3:6,234,347-6,235,777 | - | C1H3g04613 | C2H3g04826 | LOC_Os03g12940 | Os03g0232000 | OsFBO13 | Detail |
| CX3g029956 | 3:6,241,174-6,244,882 | - | C1H3g30000 | C2H3g04774 | LOC_Os03g12950 | Os03g0232200 | - | Detail |
| CX3g029446 | 3:6,261,966-6,262,187 | + | C1H3g14582 | C2H4g11700 | - | Os02g0324200 | - | Detail |
| CX3g029518 | 3:6,269,413-6,269,712 | + | - | - | - | - | - | Detail |
| CX3g028212 | 3:6,273,054-6,273,482 | + | C1H3g07150 | C2H3g26123 | LOC_Os03g12990 | Os03g0232400 | - | Detail |
| CX3g028040 | 3:6,276,757-6,277,873 | - | C1H3g22613 | C2H3g04799 | - | Os10g0433200 | - | Detail |
| CX3g028651 | 3:6,278,152-6,280,898 | + | C1H3g28102 | C2H3g26449 | LOC_Os03g13000 | Os03g0232500 | - | Detail |
| CX3g031218 | 3:6,286,359-6,287,738 | - | C1H3g02271 | C2H3g15250 | LOC_Os03g13010 | Os03g0232600 | ELF1, OsPUB31, OsPUB75, TUD1, OsTUD1 | Detail |