| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16199 | 3:8,341,674-8,344,532 | + | C2H3g17017 | CX3g030195 | LOC_Os03g17030 | Os03g0278500 | - | Detail |
| C1H3g31491 | 3:8,357,161-8,365,901 | + | C2H3g02257 | CX3g025742 | LOC_Os03g17050 | Os03g0278700 | - | Detail |
| C1H3g01943 | 3:8,366,949-8,368,202 | - | C2H3g24586 | CX3g027653 | LOC_Os03g17060 | Os03g0278800 | - | Detail |
| C1H3g21484 | 3:8,369,148-8,369,780 | - | C2H3g27921 | CX3g028557 | LOC_Os03g17070 | Os03g0278900 | - | Detail |
| C1H3g21261 | 3:8,370,220-8,373,510 | + | C2H3g12181 | CX3g025758 | LOC_Os03g17060 | Os03g0278800 | - | Detail |
| C1H3g00735 | 3:8,375,657-8,376,243 | - | C2H3g30418 | CX3g029719 | LOC_Os03g17100 | Os03g0279200 | - | Detail |
| C1H3g01283 | 3:8,383,424-8,387,617 | - | C2H3g16393 | CX3g031018 | LOC_Os03g17120 | Os03g0279400 | - | Detail |
| C1H3g17646 | 3:8,390,064-8,396,765 | - | C2H3g23941 | CX3g028159 | LOC_Os03g17140 | Os03g0279600 | - | Detail |
| C1H3g15850 | 3:8,400,796-8,401,284 | - | C2H3g05642 | CX3g030469 | LOC_Os03g17150 | Os03g0279700 | - | Detail |
| C1H3g07795 | 3:8,413,338-8,414,465 | - | - | - | - | - | - | Detail |
| C1H3g07955 | 3:8,417,490-8,418,065 | - | C2H3g05642 | CX3g030469 | LOC_Os03g17150 | Os03g0279700 | - | Detail |
| C1H3g15555 | 3:8,429,441-8,430,100 | + | C2H3g27940 | - | - | - | - | Detail |
| C1H3g10805 | 3:8,431,138-8,437,522 | + | C2H3g08725 | CX3g028650 | LOC_Os03g17164 | Os03g0279816 | - | Detail |
| C1H3g09044 | 3:8,441,135-8,442,775 | + | C2H3g11175 | - | LOC_Os03g17170 | Os03g0279900 | - | Detail |
| C1H3g24073 | 3:8,443,404-8,445,164 | + | C2H3g19320 | - | LOC_Os03g17174 | Os03g0279950 | - | Detail |
| C1H3g05773 | 3:8,445,474-8,454,429 | - | C2H3g05359 | CX3g030780 | LOC_Os03g17180 | Os03g0280000 | - | Detail |
| C1H3g27832 | 3:8,463,341-8,464,136 | + | C2H3g01051 | - | LOC_Os03g17200 | Os03g0280400 | - | Detail |
| C1H3g22706 | 3:8,481,535-8,488,032 | + | C2H3g27265 | CX3g028994 | LOC_Os03g17210 | Os03g0280700 | - | Detail |
| C1H3g01230 | 3:8,489,776-8,490,735 | + | C2H3g20835 | CX3g029125 | LOC_Os03g17220 | Os03g0280750 | - | Detail |
| C1H3g29688 | 3:8,491,236-8,493,768 | - | C2H3g25701 | CX3g025025 | LOC_Os03g17230 | Os03g0280800 | OsUXS1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g031339 | 3:5,925,173-5,928,614 | - | C1H3g19915 | C2H3g04602 | LOC_Os03g12620 | Os03g0227400 | - | Detail |
| CX3g031299 | 3:5,941,412-5,941,927 | - | - | C2H3g14769 | LOC_Os03g07739 | Os03g0173500 | - | Detail |
| CX3g027265 | 3:5,943,108-5,946,567 | + | C1H3g13701 | C2H3g27028 | LOC_Os03g12630 | Os03g0227500 | - | Detail |
| CX3g027504 | 3:5,963,114-5,969,663 | + | C1H3g10637 | C2H3g25912 | LOC_Os03g12660 | Os03g0227700 | OsDWF4, OsDWARF4, CYP90B2 | Detail |
| CX3g030163 | 3:5,971,437-5,971,685 | - | - | - | - | Os03g0227750 | - | Detail |
| CX3g025096 | 3:5,972,490-5,972,702 | + | - | C2H3g15726 | LOC_Os03g12670 | - | - | Detail |
| CX3g027410 | 3:5,977,974-5,982,482 | - | C1H3g15751 | C2H3g22097 | LOC_Os03g12680 | Os03g0227900 | - | Detail |
| CX3g026331 | 3:5,994,349-5,995,349 | - | C1H3g25563 | C2H3g16447 | LOC_Os03g12700 | Os03g0228200 | - | Detail |
| CX3g026814 | 3:5,998,262-5,999,746 | + | C1H3g16232 | C2H3g25355 | LOC_Os03g12710 | Os03g0228400 | - | Detail |
| CX3g025837 | 3:6,002,609-6,003,267 | - | C1H3g10418 | - | LOC_Os03g02370 | - | - | Detail |
| CX3g031224 | 3:6,025,544-6,028,555 | + | C1H3g23512 | C2H3g13539 | LOC_Os03g12720 | Os03g0228500 | - | Detail |
| CX3g029566 | 3:6,034,971-6,035,150 | + | - | - | - | - | - | Detail |
| CX3g027642 | 3:6,043,327-6,046,787 | - | C1H3g12564 | C2H3g13159 | LOC_Os03g12730 | Os03g0228800 | OsBRR1 | Detail |
| CX3g028683 | 3:6,057,548-6,058,668 | - | C1H3g01094 | C2H3g13186 | LOC_Os03g12760 | Os03g0229100 | - | Detail |
| CX3g029657 | 3:6,085,424-6,088,003 | - | C1H3g22208 | C2H3g28054 | LOC_Os03g12790 | Os03g0229500 | GS3.1 | Detail |
| CX3g026519 | 3:6,089,516-6,089,713 | - | - | - | - | - | - | Detail |
| CX3g031223 | 3:6,096,000-6,096,269 | - | C1H3g02835 | C2H3g29189 | - | Os03g0229575 | - | Detail |
| CX3g025778 | 3:6,104,045-6,107,300 | - | C1H3g05308 | C2H3g27019 | LOC_Os03g12810 | Os03g0229600 | - | Detail |
| CX3g030770 | 3:6,108,574-6,108,744 | + | - | - | - | Os03g0229801 | - | Detail |
| CX3g027634 | 3:6,114,109-6,114,408 | + | - | - | - | - | - | Detail |