| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g31714 | 3:3,524,674-3,527,364 | - | C2H3g07082 | CX3g025943 | LOC_Os03g19900 | Os03g0176300 | - | Detail |
| C1H3g29070 | 3:3,531,557-3,532,000 | + | - | CX3g029598 | LOC_Os03g07950 | Os03g0176500 | - | Detail |
| C1H3g15283 | 3:3,535,670-3,538,136 | - | C2H3g21895 | CX3g030266 | LOC_Os03g07960 | Os03g0176700 | - | Detail |
| C1H3g23456 | 3:3,539,632-3,543,426 | - | C2H3g00013 | CX3g029368 | LOC_Os03g07970 | Os03g0176800 | - | Detail |
| C1H3g29339 | 3:3,545,081-3,545,401 | - | C2H3g04928 | CX3g028066 | LOC_Os03g07980 | Os03g0176900 | - | Detail |
| C1H3g11831 | 3:3,547,433-3,550,737 | + | C2H3g13522 | CX3g029737 | LOC_Os03g07990 | Os03g0177000 | - | Detail |
| C1H3g26527 | 3:3,551,746-3,555,617 | + | C2H3g03958 | CX3g030435 | LOC_Os03g08000 | Os03g0177300 | - | Detail |
| C1H3g16670 | 3:3,556,288-3,559,286 | + | C2H3g29734 | CX3g025284 | LOC_Os03g08050 | Os03g0177900 | - | Detail |
| C1H3g02996 | 3:3,562,431-3,564,801 | + | C2H3g13691 | CX3g028070 | LOC_Os03g08050 | Os03g0177500 | OsEF1A | Detail |
| C1H3g00802 | 3:3,571,950-3,575,270 | + | C2H3g13691 | CX3g028070 | LOC_Os03g08050 | Os03g0177400 | - | Detail |
| C1H3g04475 | 3:3,578,437-3,581,379 | + | C2H3g13691 | CX3g025284 | LOC_Os03g08010 | Os03g0177500 | OsEF1A | Detail |
| C1H3g20350 | 3:3,581,457-3,588,568 | - | C2H3g00449 | CX3g028367 | LOC_Os03g08070 | Os03g0178100 | - | Detail |
| C1H3g15649 | 3:3,591,581-3,593,353 | + | C2H3g25180 | CX3g027428 | LOC_Os03g08080 | Os03g0178200 | - | Detail |
| C1H3g27650 | 3:3,593,500-3,594,715 | - | C2H3g26133 | CX3g029291 | LOC_Os03g08090 | Os03g0178300 | - | Detail |
| C1H3g28165 | 3:3,595,771-3,598,977 | - | C2H3g08383 | CX3g026682 | LOC_Os03g08100 | Os03g0178400 | - | Detail |
| C1H3g16865 | 3:3,600,829-3,605,538 | - | C2H3g20309 | CX3g026682 | LOC_Os03g08110 | Os03g0178500 | - | Detail |
| C1H3g20528 | 3:3,609,374-3,616,052 | + | C2H3g04420 | CX3g027590 | LOC_Os03g08140 | Os03g0179000 | OsTTLL12 | Detail |
| C1H3g07823 | 3:3,616,375-3,617,052 | + | C2H3g12070 | CX3g025130 | LOC_Os03g08150 | Os03g0179100 | - | Detail |
| C1H3g18493 | 3:3,617,875-3,619,387 | + | C2H3g20817 | CX3g029368 | LOC_Os03g07750 | Os03g0179200 | - | Detail |
| C1H3g14467 | 3:3,619,519-3,620,575 | + | C2H3g00013 | CX3g029368 | LOC_Os03g07970 | Os03g0176800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029397 | 3:5,761,227-5,764,213 | + | C1H3g05662 | C2H3g20060 | LOC_Os03g12320 | Os03g0223900 | OsLPXC | Detail |
| CX3g029992 | 3:5,774,892-5,779,245 | + | C1H3g16565 | C2H3g29213 | LOC_Os03g12350 | Os03g0224200 | - | Detail |
| CX3g029383 | 3:5,780,831-5,784,143 | - | C1H3g12418 | C2H3g11335 | LOC_Os03g12360 | Os03g0224300 | - | Detail |
| CX3g025920 | 3:5,796,849-5,799,360 | + | C1H3g18389 | C2H3g05885 | LOC_Os03g12370 | Os03g0224700 | - | Detail |
| CX3g025136 | 3:5,804,474-5,805,493 | - | C1H3g09012 | C2H3g25300 | LOC_Os03g12390 | Os03g0225100 | MPKK10.2, OsMKK10-2, MKK10-2D | Detail |
| CX3g027495 | 3:5,812,870-5,816,693 | - | C1H3g14793 | C2H3g05543 | LOC_Os03g12414 | Os03g0225200 | - | Detail |
| CX3g027176 | 3:5,818,154-5,819,566 | - | C1H3g12506 | C2H3g22350 | LOC_Os03g12430 | Os03g0225300 | - | Detail |
| CX3g025280 | 3:5,822,363-5,824,763 | + | C1H3g23318 | C2H3g03359 | LOC_Os03g12440 | - | - | Detail |
| CX3g030046 | 3:5,826,086-5,834,450 | + | C1H3g17135 | C2H3g24748 | LOC_Os03g12450 | Os03g0225500 | - | Detail |
| CX3g028144 | 3:5,835,584-5,841,857 | + | C1H3g25680 | C2H3g09129 | LOC_Os03g12460 | Os03g0225600 | - | Detail |
| CX3g025098 | 3:5,843,739-5,848,413 | + | C1H3g10808 | C2H3g02566 | LOC_Os03g12470 | Os03g0225700 | WAK25, OsWAK25 | Detail |
| CX3g026153 | 3:5,861,373-5,862,224 | - | C1H3g02465 | C2H3g10692 | LOC_Os03g12510 | Os03g0226200 | Hb2, OsPgb1.2 | Detail |
| CX3g028573 | 3:5,863,694-5,866,110 | + | C1H3g31559 | C2H3g15869 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| CX3g027606 | 3:5,872,059-5,876,162 | + | C1H3g15877 | C2H3g29082 | LOC_Os03g12530 | Os03g0226400 | - | Detail |
| CX3g025975 | 3:5,883,076-5,889,445 | + | C1H3g27940 | C2H3g13286 | LOC_Os03g12550 | Os03g0226600 | - | Detail |
| CX3g027982 | 3:5,890,409-5,892,201 | - | C1H3g15687 | C2H3g30568 | LOC_Os03g12560 | Os03g0226700 | - | Detail |
| CX3g024984 | 3:5,893,447-5,899,229 | + | C1H3g18854 | C2H3g00790 | LOC_Os03g12570 | Os03g0226800 | CMT3b | Detail |
| CX3g027871 | 3:5,900,388-5,903,199 | + | C1H3g26728 | C2H3g22427 | LOC_Os03g12570 | Os03g0226901 | - | Detail |
| CX3g030829 | 3:5,907,319-5,914,142 | + | C1H3g26232 | C2H3g07335 | LOC_Os03g12590 | Os03g0227000 | - | Detail |
| CX3g026050 | 3:5,917,366-5,924,697 | + | C1H3g22048 | C2H3g16667 | LOC_Os03g12610 | Os03g0227300 | - | Detail |