| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H6g00685 | 6:5,847,765-5,850,782 | - | C2H6g25379 | CX6g044633 | LOC_Os06g12330 | Os06g0228600 | - | Detail |
| C1H6g13390 | 6:5,854,491-5,857,802 | - | C2H6g08385 | CX6g044499 | LOC_Os06g12350 | Os06g0228800 | - | Detail |
| C1H6g15439 | 6:5,862,508-5,863,566 | + | C2H6g28900 | CX6g044911 | LOC_Os06g12360 | Os06g0228950 | - | Detail |
| C1H6g14481 | 6:5,864,281-5,867,040 | - | C2H6g05024 | CX6g043477 | LOC_Os06g12370 | Os06g0229000 | - | Detail |
| C1H6g30867 | 6:5,876,244-5,881,974 | + | C2H6g02329 | CX6g043791 | LOC_Os06g12390 | Os06g0229200 | GalT | Detail |
| C1H6g06761 | 6:5,885,054-5,892,816 | + | C2H6g13941 | CX6g041469 | LOC_Os06g12400 | Os06g0229300 | - | Detail |
| C1H6g31791 | 6:5,894,252-5,895,858 | + | C2H6g19443 | CX6g045028 | LOC_Os06g12410 | Os06g0257600 | - | Detail |
| C1H6g30269 | 6:5,897,349-5,902,200 | + | C2H6g15100 | CX6g044435 | LOC_Os06g12450 | Os06g0229800 | ALK, alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6 | Detail |
| C1H6g02539 | 6:5,907,005-5,912,074 | + | C2H6g02967 | CX6g041722 | LOC_Os06g12460 | Os06g0230100 | OsCSLA3 | Detail |
| C1H6g20958 | 6:5,920,549-5,921,358 | + | C2H6g18393 | CX6g043899 | LOC_Os06g12500 | Os06g0231050 | CASP3, OsCASP3 | Detail |
| C1H6g10940 | 6:5,925,763-5,927,919 | + | C2H6g25430 | CX6g042953 | LOC_Os06g12530 | Os06g0231300 | ROX3 | Detail |
| C1H6g09372 | 6:5,936,391-5,938,743 | - | C2H6g20507 | CX6g042127 | LOC_Os06g12560 | Os06g0231600 | - | Detail |
| C1H6g21654 | 6:5,941,708-5,944,965 | - | C2H6g04942 | CX6g045497 | LOC_Os06g12580 | Os06g0232000 | - | Detail |
| C1H6g04188 | 6:5,947,891-5,948,394 | + | - | CX6g042920 | - | - | - | Detail |
| C1H6g16903 | 6:5,949,407-5,959,343 | - | C2H6g06021 | CX6g044039 | LOC_Os06g12590 | Os06g0232100 | - | Detail |
| C1H6g16972 | 6:5,969,640-5,975,418 | + | C2H6g20456 | CX6g043544 | LOC_Os06g12600 | Os06g0232200 | OsFRK3 | Detail |
| C1H6g17211 | 6:5,992,757-5,996,174 | + | C2H6g11066 | CX6g041379 | LOC_Os06g12610 | Os06g0232300 | OsPIN1a | Detail |
| C1H6g01622 | 6:6,001,337-6,001,843 | - | C2H6g26342 | CX6g043622 | LOC_Os06g12620 | Os06g0232400 | - | Detail |
| C1H6g13976 | 6:6,015,004-6,017,900 | - | C2H6g04539 | CX6g045802 | LOC_Os06g12630 | Os06g0232600 | - | Detail |
| C1H6g19729 | 6:6,022,157-6,022,933 | + | C2H6g12736 | - | LOC_Os06g12640 | Os06g0232700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029397 | 3:5,761,227-5,764,213 | + | C1H3g05662 | C2H3g20060 | LOC_Os03g12320 | Os03g0223900 | OsLPXC | Detail |
| CX3g029992 | 3:5,774,892-5,779,245 | + | C1H3g16565 | C2H3g29213 | LOC_Os03g12350 | Os03g0224200 | - | Detail |
| CX3g029383 | 3:5,780,831-5,784,143 | - | C1H3g12418 | C2H3g11335 | LOC_Os03g12360 | Os03g0224300 | - | Detail |
| CX3g025920 | 3:5,796,849-5,799,360 | + | C1H3g18389 | C2H3g05885 | LOC_Os03g12370 | Os03g0224700 | - | Detail |
| CX3g025136 | 3:5,804,474-5,805,493 | - | C1H3g09012 | C2H3g25300 | LOC_Os03g12390 | Os03g0225100 | MPKK10.2, OsMKK10-2, MKK10-2D | Detail |
| CX3g027495 | 3:5,812,870-5,816,693 | - | C1H3g14793 | C2H3g05543 | LOC_Os03g12414 | Os03g0225200 | - | Detail |
| CX3g027176 | 3:5,818,154-5,819,566 | - | C1H3g12506 | C2H3g22350 | LOC_Os03g12430 | Os03g0225300 | - | Detail |
| CX3g025280 | 3:5,822,363-5,824,763 | + | C1H3g23318 | C2H3g03359 | LOC_Os03g12440 | - | - | Detail |
| CX3g030046 | 3:5,826,086-5,834,450 | + | C1H3g17135 | C2H3g24748 | LOC_Os03g12450 | Os03g0225500 | - | Detail |
| CX3g028144 | 3:5,835,584-5,841,857 | + | C1H3g25680 | C2H3g09129 | LOC_Os03g12460 | Os03g0225600 | - | Detail |
| CX3g025098 | 3:5,843,739-5,848,413 | + | C1H3g10808 | C2H3g02566 | LOC_Os03g12470 | Os03g0225700 | WAK25, OsWAK25 | Detail |
| CX3g026153 | 3:5,861,373-5,862,224 | - | C1H3g02465 | C2H3g10692 | LOC_Os03g12510 | Os03g0226200 | Hb2, OsPgb1.2 | Detail |
| CX3g028573 | 3:5,863,694-5,866,110 | + | C1H3g31559 | C2H3g15869 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| CX3g027606 | 3:5,872,059-5,876,162 | + | C1H3g15877 | C2H3g29082 | LOC_Os03g12530 | Os03g0226400 | - | Detail |
| CX3g025975 | 3:5,883,076-5,889,445 | + | C1H3g27940 | C2H3g13286 | LOC_Os03g12550 | Os03g0226600 | - | Detail |
| CX3g027982 | 3:5,890,409-5,892,201 | - | C1H3g15687 | C2H3g30568 | LOC_Os03g12560 | Os03g0226700 | - | Detail |
| CX3g024984 | 3:5,893,447-5,899,229 | + | C1H3g18854 | C2H3g00790 | LOC_Os03g12570 | Os03g0226800 | CMT3b | Detail |
| CX3g027871 | 3:5,900,388-5,903,199 | + | C1H3g26728 | C2H3g22427 | LOC_Os03g12570 | Os03g0226901 | - | Detail |
| CX3g030829 | 3:5,907,319-5,914,142 | + | C1H3g26232 | C2H3g07335 | LOC_Os03g12590 | Os03g0227000 | - | Detail |
| CX3g026050 | 3:5,917,366-5,924,697 | + | C1H3g22048 | C2H3g16667 | LOC_Os03g12610 | Os03g0227300 | - | Detail |