| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g30308 | 3:7,945,396-7,948,568 | + | C1H3g15183 | CX3g026903 | LOC_Os03g16430 | Os03g0271100 | - | Detail |
| C2H3g26882 | 3:7,949,113-7,954,747 | + | C1H3g23817 | CX3g030405 | LOC_Os03g16440 | Os03g0271200 | - | Detail |
| C2H3g19632 | 3:7,955,220-7,956,629 | + | C1H3g23484 | CX3g027711 | LOC_Os03g16450 | Os03g0271300 | - | Detail |
| C2H3g27304 | 3:7,957,387-7,960,301 | - | C1H3g07914 | CX3g030348 | LOC_Os03g16460 | Os03g0271400 | - | Detail |
| C2H3g08754 | 3:7,960,637-7,961,302 | + | C1H3g07286 | CX3g027827 | LOC_Os03g16470 | Os03g0271500 | - | Detail |
| C2H3g12514 | 3:7,965,038-7,965,877 | + | C1H3g24126 | CX3g027903 | LOC_Os03g16480 | Os03g0271600 | - | Detail |
| C2H3g28191 | 3:7,973,222-7,974,559 | + | C1H3g27178 | CX3g028371 | LOC_Os03g16500 | Os03g0271900 | - | Detail |
| C2H3g14243 | 3:7,978,495-7,981,263 | + | C1H3g08714 | CX3g029063 | LOC_Os03g16570 | Os03g0272300 | OsSDIR1 | Detail |
| C2H3g29860 | 3:7,983,814-7,988,605 | + | C1H3g26204 | CX3g029825 | LOC_Os03g16580 | Os03g0272400 | - | Detail |
| C2H3g08510 | 3:8,001,898-8,002,197 | - | C1H3g01466 | CX3g025184 | LOC_Os03g16600 | Os03g0272900 | - | Detail |
| C2H3g05813 | 3:8,009,856-8,012,460 | - | C1H3g27326 | CX3g029074 | LOC_Os03g16610 | Os03g0273200 | - | Detail |
| C2H3g18809 | 3:8,025,834-8,031,802 | + | C1H3g20619 | CX3g029547 | LOC_Os03g18060 | - | - | Detail |
| C2H3g10490 | 3:8,031,823-8,032,173 | + | C1H3g14918 | CX3g029547 | - | - | - | Detail |
| C2H3g16464 | 3:8,041,000-8,042,464 | + | C1H3g04298 | CX3g027726 | LOC_Os03g16670 | Os03g0273800 | OsHAD3 | Detail |
| C2H3g21796 | 3:8,055,677-8,061,052 | + | C1H3g26678 | CX3g025279 | LOC_Os03g16690 | Os03g0274000 | - | Detail |
| C2H3g00969 | 3:8,081,406-8,086,677 | + | C1H3g14789 | CX3g027149 | LOC_Os03g16700 | Os03g0274300 | - | Detail |
| C2H3g06926 | 3:8,092,894-8,095,931 | + | C1H3g26177 | CX3g026360 | LOC_Os03g16730 | Os03g0274700 | - | Detail |
| C2H3g23241 | 3:8,096,178-8,099,485 | - | C1H3g25668 | CX3g025011 | LOC_Os03g16740 | Os03g0274800 | OsRLCK107 | Detail |
| C2H3g07201 | 3:8,110,225-8,113,064 | + | C1H3g02943 | CX3g028865 | LOC_Os03g16760 | Os03g0275100 | - | Detail |
| C2H3g02844 | 3:8,122,034-8,125,175 | - | C1H3g20146 | CX3g026629 | LOC_Os03g16780 | Os03g0275300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026270 | 3:5,614,642-5,616,392 | - | C1H3g10915 | C2H3g23972 | LOC_Os03g12030 | Os03g0220100 | WSL4, CER6/CUT1, CER6, CUT1, OsCER6 | Detail |
| CX3g025137 | 3:5,637,155-5,639,607 | + | C1H3g01618 | C2H3g23561 | LOC_Os03g12110 | Os03g0221200 | - | Detail |
| CX3g025281 | 3:5,640,506-5,647,764 | - | C1H3g06610 | C2H3g25327 | LOC_Os03g12120 | Os03g0221300 | - | Detail |
| CX3g028100 | 3:5,650,904-5,654,583 | + | C1H3g09947 | C2H3g25299 | LOC_Os03g12140 | Os03g0221500 | - | Detail |
| CX3g026372 | 3:5,657,955-5,660,492 | + | C1H3g29297 | C2H3g19033 | LOC_Os03g12150 | Os03g0221700 | SDRLK-9 | Detail |
| CX3g031100 | 3:5,660,963-5,669,034 | - | C1H3g11455 | C2H3g25606 | LOC_Os03g12160 | Os03g0221800 | - | Detail |
| CX3g028642 | 3:5,672,190-5,674,180 | - | C1H3g05328 | C2H3g28200 | LOC_Os03g12180 | Os03g0222100 | - | Detail |
| CX3g030699 | 3:5,676,564-5,677,169 | - | - | C2H2g29677 | - | - | - | Detail |
| CX3g031233 | 3:5,685,485-5,685,649 | + | - | - | - | - | - | Detail |
| CX3g031317 | 3:5,692,123-5,694,406 | + | C1H3g07232 | C2H3g09344 | LOC_Os03g12230 | Os03g0222600 | - | Detail |
| CX3g028958 | 3:5,695,882-5,700,628 | + | C1H3g04972 | C2H3g04698 | LOC_Os03g12236 | Os03g0222800 | - | Detail |
| CX3g027447 | 3:5,702,338-5,702,995 | + | C1H3g26972 | C2H3g19892 | LOC_Os03g12238 | - | - | Detail |
| CX3g028535 | 3:5,705,629-5,706,430 | - | C1H8g10018 | C2H12g28545 | LOC_Os08g06840 | - | - | Detail |
| CX3g031278 | 3:5,708,970-5,712,082 | + | C1H3g14957 | C2H3g10667 | LOC_Os03g12250 | Os03g0223000 | - | Detail |
| CX3g030840 | 3:5,717,439-5,719,025 | - | C1H3g14297 | C2H3g29015 | LOC_Os03g12260 | Os03g0223100 | CYP94D15, OsCYP94D15 | Detail |
| CX3g029663 | 3:5,724,364-5,726,767 | + | C1H3g13087 | C2H3g13113 | LOC_Os03g12270 | Os03g0223200 | - | Detail |
| CX3g028270 | 3:5,730,139-5,730,456 | - | - | - | LOC_Os03g02874 | - | - | Detail |
| CX3g028859 | 3:5,732,663-5,736,523 | - | C1H3g19225 | C2H3g16993 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| CX3g025777 | 3:5,741,409-5,748,715 | - | C1H3g02751 | C2H3g01042 | LOC_Os03g12300 | Os03g0223700 | - | Detail |
| CX3g027170 | 3:5,755,695-5,756,168 | + | - | - | LOC_Os03g12310 | Os06g0305200 | - | Detail |