| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g11363 | 5:13,536,349-13,536,843 | - | - | CX5g040069 | LOC_Os05g28840 | Os05g0356800 | - | Detail |
| C1H5g31648 | 5:13,543,810-13,550,269 | + | C2H5g24764 | CX5g040608 | LOC_Os05g28860 | Os05g0357100 | - | Detail |
| C1H5g23359 | 5:13,553,750-13,557,697 | + | C2H5g24182 | CX5g039247 | LOC_Os05g28870 | Os05g0357200 | - | Detail |
| C1H5g03054 | 5:13,571,163-13,571,549 | + | C2H5g04780 | - | LOC_Os05g28930 | Os05g0357500 | - | Detail |
| C1H5g02870 | 5:13,573,608-13,575,941 | + | C2H5g05040 | CX5g039137 | LOC_Os05g28930 | Os05g0409500 | - | Detail |
| C1H5g10874 | 5:13,580,070-13,586,789 | + | C2H5g26423 | CX5g039940 | LOC_Os05g28940 | Os05g0357600 | - | Detail |
| C1H5g28225 | 5:13,587,611-13,590,802 | + | C2H5g16492 | CX5g039406 | LOC_Os05g28950 | Os05g0357700 | - | Detail |
| C1H5g03244 | 5:13,592,665-13,597,057 | - | C2H5g23485 | CX5g039295 | LOC_Os05g28960 | Os05g0357800 | - | Detail |
| C1H5g07764 | 5:13,600,404-13,605,579 | - | C2H5g02423 | CX5g040983 | LOC_Os05g28980 | Os05g0562200 | - | Detail |
| C1H5g03245 | 5:13,609,620-13,610,135 | - | C2H5g03271 | CX5g039973 | LOC_Os05g29000 | Os05g0576600 | - | Detail |
| C1H5g06850 | 5:13,616,500-13,621,541 | - | C2H5g18517 | CX5g039449 | LOC_Os05g29010 | Os05g0358200 | - | Detail |
| C1H5g03489 | 5:13,623,433-13,626,094 | + | C2H5g01658 | - | - | - | - | Detail |
| C1H5g29355 | 5:13,627,872-13,630,636 | + | C2H5g18308 | CX5g040880 | LOC_Os05g29020 | Os05g0358400 | - | Detail |
| C1H5g26207 | 5:13,630,855-13,635,294 | - | C2H5g24350 | CX5g038320 | LOC_Os05g29030 | Os05g0358500 | - | Detail |
| C1H5g07959 | 5:13,669,561-13,680,280 | - | C2H5g09784 | CX5g036891 | LOC_Os05g29050 | Os05g0358700 | - | Detail |
| C1H5g11715 | 5:13,699,696-13,700,385 | - | C2H5g26181 | CX5g039572 | LOC_Os05g29080 | Os05g0358900 | - | Detail |
| C1H5g02402 | 5:13,702,561-13,706,818 | - | C2H5g26282 | - | LOC_Os05g29090 | Os05g0359000 | - | Detail |
| C1H5g30237 | 5:13,717,135-13,717,824 | + | C2H5g10119 | CX5g036901 | LOC_Os05g29150 | Os05g0359500 | - | Detail |
| C1H5g17878 | 5:13,732,235-13,732,843 | + | C2H5g10119 | CX5g037230 | LOC_Os05g29676 | Os05g0360400 | - | Detail |
| C1H5g28482 | 5:13,745,587-13,746,180 | + | C2H5g10119 | CX5g038039 | LOC_Os05g29710 | Os05g0360400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026270 | 3:5,614,642-5,616,392 | - | C1H3g10915 | C2H3g23972 | LOC_Os03g12030 | Os03g0220100 | WSL4, CER6/CUT1, CER6, CUT1, OsCER6 | Detail |
| CX3g025137 | 3:5,637,155-5,639,607 | + | C1H3g01618 | C2H3g23561 | LOC_Os03g12110 | Os03g0221200 | - | Detail |
| CX3g025281 | 3:5,640,506-5,647,764 | - | C1H3g06610 | C2H3g25327 | LOC_Os03g12120 | Os03g0221300 | - | Detail |
| CX3g028100 | 3:5,650,904-5,654,583 | + | C1H3g09947 | C2H3g25299 | LOC_Os03g12140 | Os03g0221500 | - | Detail |
| CX3g026372 | 3:5,657,955-5,660,492 | + | C1H3g29297 | C2H3g19033 | LOC_Os03g12150 | Os03g0221700 | SDRLK-9 | Detail |
| CX3g031100 | 3:5,660,963-5,669,034 | - | C1H3g11455 | C2H3g25606 | LOC_Os03g12160 | Os03g0221800 | - | Detail |
| CX3g028642 | 3:5,672,190-5,674,180 | - | C1H3g05328 | C2H3g28200 | LOC_Os03g12180 | Os03g0222100 | - | Detail |
| CX3g030699 | 3:5,676,564-5,677,169 | - | - | C2H2g29677 | - | - | - | Detail |
| CX3g031233 | 3:5,685,485-5,685,649 | + | - | - | - | - | - | Detail |
| CX3g031317 | 3:5,692,123-5,694,406 | + | C1H3g07232 | C2H3g09344 | LOC_Os03g12230 | Os03g0222600 | - | Detail |
| CX3g028958 | 3:5,695,882-5,700,628 | + | C1H3g04972 | C2H3g04698 | LOC_Os03g12236 | Os03g0222800 | - | Detail |
| CX3g027447 | 3:5,702,338-5,702,995 | + | C1H3g26972 | C2H3g19892 | LOC_Os03g12238 | - | - | Detail |
| CX3g028535 | 3:5,705,629-5,706,430 | - | C1H8g10018 | C2H12g28545 | LOC_Os08g06840 | - | - | Detail |
| CX3g031278 | 3:5,708,970-5,712,082 | + | C1H3g14957 | C2H3g10667 | LOC_Os03g12250 | Os03g0223000 | - | Detail |
| CX3g030840 | 3:5,717,439-5,719,025 | - | C1H3g14297 | C2H3g29015 | LOC_Os03g12260 | Os03g0223100 | CYP94D15, OsCYP94D15 | Detail |
| CX3g029663 | 3:5,724,364-5,726,767 | + | C1H3g13087 | C2H3g13113 | LOC_Os03g12270 | Os03g0223200 | - | Detail |
| CX3g028270 | 3:5,730,139-5,730,456 | - | - | - | LOC_Os03g02874 | - | - | Detail |
| CX3g028859 | 3:5,732,663-5,736,523 | - | C1H3g19225 | C2H3g16993 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| CX3g025777 | 3:5,741,409-5,748,715 | - | C1H3g02751 | C2H3g01042 | LOC_Os03g12300 | Os03g0223700 | - | Detail |
| CX3g027170 | 3:5,755,695-5,756,168 | + | - | - | LOC_Os03g12310 | Os06g0305200 | - | Detail |