| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g01633 | 1:13,985,566-13,987,145 | + | C2H1g16372 | CX1g000761 | LOC_Os01g27380 | Os01g0371400 | - | Detail |
| C1H1g01995 | 1:13,987,557-13,990,326 | + | C2H1g14709 | CX1g000761 | LOC_Os01g27390 | Os01g0371500 | - | Detail |
| C1H1g01504 | 1:13,998,693-13,999,781 | + | C2H1g17472 | CX1g005217 | LOC_Os01g27470 | Os01g0918300 | - | Detail |
| C1H1g17266 | 1:14,001,289-14,001,888 | + | - | - | - | - | - | Detail |
| C1H1g12705 | 1:14,004,630-14,005,499 | + | C2H1g29817 | CX1g000438 | LOC_Os01g27480 | Os01g0372400 | - | Detail |
| C1H1g03999 | 1:14,014,209-14,018,105 | - | C2H1g22981 | CX1g002992 | LOC_Os01g27520 | Os01g0372700 | - | Detail |
| C1H1g23536 | 1:14,024,746-14,026,920 | - | C2H1g25759 | - | LOC_Os01g27570 | Os01g0373200 | - | Detail |
| C1H1g26843 | 1:14,052,677-14,053,791 | + | C2H1g20925 | CX1g000761 | LOC_Os01g27630 | Os01g0374000 | - | Detail |
| C1H1g29878 | 1:14,074,603-14,075,089 | - | - | CX1g006362 | - | - | - | Detail |
| C1H1g28149 | 1:14,095,777-14,101,195 | + | C2H1g20909 | CX1g004412 | LOC_Os01g27700 | Os01g0374600 | - | Detail |
| C1H1g20959 | 1:14,114,711-14,118,317 | + | C2H1g09188 | CX1g004732 | LOC_Os01g27720 | Os01g0374900 | - | Detail |
| C1H1g00644 | 1:14,125,958-14,129,334 | - | C2H1g06879 | CX1g001904 | LOC_Os01g27730 | Os01g0375000 | - | Detail |
| C1H1g07698 | 1:14,135,205-14,139,334 | - | - | - | - | - | - | Detail |
| C1H1g01071 | 1:14,140,780-14,153,926 | + | C2H1g10267 | CX1g003513 | LOC_Os01g27750 | Os01g0375200 | - | Detail |
| C1H1g18637 | 1:14,162,937-14,172,346 | + | C2H1g13628 | CX1g003513 | LOC_Os01g27750 | Os01g0375500 | - | Detail |
| C1H1g22380 | 1:14,195,576-14,195,833 | + | - | - | - | - | - | Detail |
| C1H1g01263 | 1:14,225,763-14,230,411 | - | C2H1g12554 | CX1g004909 | LOC_Os01g27880 | Os01g0376700 | - | Detail |
| C1H1g16294 | 1:14,233,831-14,235,701 | - | C2H1g07279 | CX1g001309 | LOC_Os01g27890 | Os01g0377000 | - | Detail |
| C1H1g11469 | 1:14,242,780-14,248,505 | - | C2H1g24403 | CX1g006147 | LOC_Os01g27940 | Os01g0377500 | - | Detail |
| C1H1g30770 | 1:14,260,828-14,265,036 | + | C2H1g07748 | CX1g002553 | LOC_Os01g27990 | Os01g0377700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026270 | 3:5,614,642-5,616,392 | - | C1H3g10915 | C2H3g23972 | LOC_Os03g12030 | Os03g0220100 | WSL4, CER6/CUT1, CER6, CUT1, OsCER6 | Detail |
| CX3g025137 | 3:5,637,155-5,639,607 | + | C1H3g01618 | C2H3g23561 | LOC_Os03g12110 | Os03g0221200 | - | Detail |
| CX3g025281 | 3:5,640,506-5,647,764 | - | C1H3g06610 | C2H3g25327 | LOC_Os03g12120 | Os03g0221300 | - | Detail |
| CX3g028100 | 3:5,650,904-5,654,583 | + | C1H3g09947 | C2H3g25299 | LOC_Os03g12140 | Os03g0221500 | - | Detail |
| CX3g026372 | 3:5,657,955-5,660,492 | + | C1H3g29297 | C2H3g19033 | LOC_Os03g12150 | Os03g0221700 | SDRLK-9 | Detail |
| CX3g031100 | 3:5,660,963-5,669,034 | - | C1H3g11455 | C2H3g25606 | LOC_Os03g12160 | Os03g0221800 | - | Detail |
| CX3g028642 | 3:5,672,190-5,674,180 | - | C1H3g05328 | C2H3g28200 | LOC_Os03g12180 | Os03g0222100 | - | Detail |
| CX3g030699 | 3:5,676,564-5,677,169 | - | - | C2H2g29677 | - | - | - | Detail |
| CX3g031233 | 3:5,685,485-5,685,649 | + | - | - | - | - | - | Detail |
| CX3g031317 | 3:5,692,123-5,694,406 | + | C1H3g07232 | C2H3g09344 | LOC_Os03g12230 | Os03g0222600 | - | Detail |
| CX3g028958 | 3:5,695,882-5,700,628 | + | C1H3g04972 | C2H3g04698 | LOC_Os03g12236 | Os03g0222800 | - | Detail |
| CX3g027447 | 3:5,702,338-5,702,995 | + | C1H3g26972 | C2H3g19892 | LOC_Os03g12238 | - | - | Detail |
| CX3g028535 | 3:5,705,629-5,706,430 | - | C1H8g10018 | C2H12g28545 | LOC_Os08g06840 | - | - | Detail |
| CX3g031278 | 3:5,708,970-5,712,082 | + | C1H3g14957 | C2H3g10667 | LOC_Os03g12250 | Os03g0223000 | - | Detail |
| CX3g030840 | 3:5,717,439-5,719,025 | - | C1H3g14297 | C2H3g29015 | LOC_Os03g12260 | Os03g0223100 | CYP94D15, OsCYP94D15 | Detail |
| CX3g029663 | 3:5,724,364-5,726,767 | + | C1H3g13087 | C2H3g13113 | LOC_Os03g12270 | Os03g0223200 | - | Detail |
| CX3g028270 | 3:5,730,139-5,730,456 | - | - | - | LOC_Os03g02874 | - | - | Detail |
| CX3g028859 | 3:5,732,663-5,736,523 | - | C1H3g19225 | C2H3g16993 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| CX3g025777 | 3:5,741,409-5,748,715 | - | C1H3g02751 | C2H3g01042 | LOC_Os03g12300 | Os03g0223700 | - | Detail |
| CX3g027170 | 3:5,755,695-5,756,168 | + | - | - | LOC_Os03g12310 | Os06g0305200 | - | Detail |