| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H6g03363 | 6:20,741,190-20,743,961 | + | C2H6g28120 | CX6g042659 | LOC_Os06g39960 | Os06g0601500 | OsbZIP48, OsHY5L2 | Detail |
| C1H6g30468 | 6:20,745,286-20,748,544 | + | C2H6g17237 | CX6g042583 | LOC_Os06g39970 | Os06g0601600 | OsCESA11 | Detail |
| C1H6g18591 | 6:20,756,432-20,761,437 | + | C2H6g29039 | CX6g044674 | LOC_Os06g40020 | Os06g0602400 | OsRH52A | Detail |
| C1H6g13553 | 6:20,764,015-20,766,456 | - | C2H6g00455 | CX6g043985 | LOC_Os06g40030 | Os06g0602500 | SDRLK-38 | Detail |
| C1H6g01432 | 6:20,776,350-20,777,897 | + | C2H6g11572 | CX6g045252 | LOC_Os06g40040 | Os06g0602600 | - | Detail |
| C1H6g22569 | 6:20,778,453-20,782,098 | - | C2H6g05068 | CX6g041818 | LOC_Os06g40050 | Os06g0602700 | BT1-3, OsBT1-3 | Detail |
| C1H6g14736 | 6:20,798,183-20,802,258 | + | C2H6g14435 | CX6g042177 | LOC_Os06g40060 | Os06g0602800 | - | Detail |
| C1H6g19546 | 6:20,802,902-20,806,213 | - | C2H6g04094 | CX6g041181 | LOC_Os06g40070 | Os06g0602900 | - | Detail |
| C1H6g00043 | 6:20,808,705-20,812,222 | - | C2H6g04563 | CX6g043114 | LOC_Os06g40080 | Os06g0603000 | SE5, Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, PE-1, grc1 | Detail |
| C1H6g15267 | 6:20,818,334-20,818,963 | - | - | CX6g043884 | LOC_Os06g40090 | Os06g0603300 | - | Detail |
| C1H6g03115 | 6:20,828,888-20,829,673 | - | - | CX6g044727 | LOC_Os06g40110 | Os06g0603400 | - | Detail |
| C1H6g11187 | 6:20,830,778-20,834,820 | - | C2H6g18680 | CX6g043946 | LOC_Os06g40120 | Os06g0603600 | OsSPX1 | Detail |
| C1H6g05477 | 6:20,851,144-20,852,115 | - | C2H6g21981 | CX6g044688 | LOC_Os06g40150 | Os06g0604000 | OsWR2 | Detail |
| C1H6g20423 | 6:20,860,290-20,863,424 | - | C2H6g11228 | CX6g045934 | LOC_Os06g40170 | Os06g0604200 | OsPLDα4, OsPLDa4, OsPLDalpha4, PLDalpha4 | Detail |
| C1H6g10180 | 6:20,873,907-20,876,878 | + | C2H6g26456 | CX6g045594 | LOC_Os06g40180 | Os06g0604300 | OsPLDα5, OsPLDa5, OsPLDalpha5, PLDalpha5 | Detail |
| C1H6g30929 | 6:20,879,496-20,883,093 | - | C2H1g07562 | - | - | Os07g0248900 | - | Detail |
| C1H6g27795 | 6:20,886,285-20,889,959 | + | C2H6g06437 | CX6g041305 | LOC_Os06g40190 | Os06g0604400 | OsPLDα3 | Detail |
| C1H6g25357 | 6:20,893,132-20,897,107 | + | C2H6g13702 | CX6g042132 | LOC_Os06g40200 | Os06g0604500 | - | Detail |
| C1H6g04884 | 6:20,907,660-20,908,195 | + | C2H6g02651 | CX6g044895 | LOC_Os06g40210 | Os06g0604600 | - | Detail |
| C1H6g20614 | 6:20,916,125-20,917,469 | - | C2H6g13160 | CX6g045437 | LOC_Os06g40220 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026270 | 3:5,614,642-5,616,392 | - | C1H3g10915 | C2H3g23972 | LOC_Os03g12030 | Os03g0220100 | WSL4, CER6/CUT1, CER6, CUT1, OsCER6 | Detail |
| CX3g025137 | 3:5,637,155-5,639,607 | + | C1H3g01618 | C2H3g23561 | LOC_Os03g12110 | Os03g0221200 | - | Detail |
| CX3g025281 | 3:5,640,506-5,647,764 | - | C1H3g06610 | C2H3g25327 | LOC_Os03g12120 | Os03g0221300 | - | Detail |
| CX3g028100 | 3:5,650,904-5,654,583 | + | C1H3g09947 | C2H3g25299 | LOC_Os03g12140 | Os03g0221500 | - | Detail |
| CX3g026372 | 3:5,657,955-5,660,492 | + | C1H3g29297 | C2H3g19033 | LOC_Os03g12150 | Os03g0221700 | SDRLK-9 | Detail |
| CX3g031100 | 3:5,660,963-5,669,034 | - | C1H3g11455 | C2H3g25606 | LOC_Os03g12160 | Os03g0221800 | - | Detail |
| CX3g028642 | 3:5,672,190-5,674,180 | - | C1H3g05328 | C2H3g28200 | LOC_Os03g12180 | Os03g0222100 | - | Detail |
| CX3g030699 | 3:5,676,564-5,677,169 | - | - | C2H2g29677 | - | - | - | Detail |
| CX3g031233 | 3:5,685,485-5,685,649 | + | - | - | - | - | - | Detail |
| CX3g031317 | 3:5,692,123-5,694,406 | + | C1H3g07232 | C2H3g09344 | LOC_Os03g12230 | Os03g0222600 | - | Detail |
| CX3g028958 | 3:5,695,882-5,700,628 | + | C1H3g04972 | C2H3g04698 | LOC_Os03g12236 | Os03g0222800 | - | Detail |
| CX3g027447 | 3:5,702,338-5,702,995 | + | C1H3g26972 | C2H3g19892 | LOC_Os03g12238 | - | - | Detail |
| CX3g028535 | 3:5,705,629-5,706,430 | - | C1H8g10018 | C2H12g28545 | LOC_Os08g06840 | - | - | Detail |
| CX3g031278 | 3:5,708,970-5,712,082 | + | C1H3g14957 | C2H3g10667 | LOC_Os03g12250 | Os03g0223000 | - | Detail |
| CX3g030840 | 3:5,717,439-5,719,025 | - | C1H3g14297 | C2H3g29015 | LOC_Os03g12260 | Os03g0223100 | CYP94D15, OsCYP94D15 | Detail |
| CX3g029663 | 3:5,724,364-5,726,767 | + | C1H3g13087 | C2H3g13113 | LOC_Os03g12270 | Os03g0223200 | - | Detail |
| CX3g028270 | 3:5,730,139-5,730,456 | - | - | - | LOC_Os03g02874 | - | - | Detail |
| CX3g028859 | 3:5,732,663-5,736,523 | - | C1H3g19225 | C2H3g16993 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| CX3g025777 | 3:5,741,409-5,748,715 | - | C1H3g02751 | C2H3g01042 | LOC_Os03g12300 | Os03g0223700 | - | Detail |
| CX3g027170 | 3:5,755,695-5,756,168 | + | - | - | LOC_Os03g12310 | Os06g0305200 | - | Detail |